View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_35 (Length: 287)
Name: NF20107_low_35
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 48342487 - 48342228
Alignment:
| Q |
20 |
ctcttacccccaaatagtttgggctcatgtttctctcttttcttggtttgtaattttgatatgcattttttatttactgcaacatgatctgttatgatat |
119 |
Q |
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| T |
48342487 |
ctcttacccccaaatagtttgggctcatgtttctctcttttcttggtttgtaattttgatatgcattttttatttactgcaacatgatctgttatgatat |
48342388 |
T |
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| Q |
120 |
gctcattctcctcatgccaatcatcttcgtttgaaaggtaatctaaagaaagaattacaagcaacatgtttaggtcaacaagagatgtgtttgacatatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48342387 |
gctcattctcctcatgccaatcatcttcgtttgaaaggtaatctaaagaaagaattacaagcaacatgtttaggtcaacaagagatgtgtttgacacatg |
48342288 |
T |
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| Q |
220 |
tgaatgagacaatgtttcattttcttcttccccttcacattcttccaatttattcatctc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48342287 |
tgaatgagacaatgtttcattttcttcttccccttcacattcttccaatttattcatctc |
48342228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 2242109 - 2242067
Alignment:
| Q |
27 |
ccccaaatagtttgggctcatgtttctctcttttcttggtttg |
69 |
Q |
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| T |
2242109 |
ccccaaatagtttgggctcatgttgatctcttttcttggtttg |
2242067 |
T |
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