View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_low_38 (Length: 258)

Name: NF20107_low_38
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_low_38
NF20107_low_38
[»] chr5 (18 HSPs)
chr5 (19-248)||(10217504-10217731)
chr5 (96-245)||(11049415-11049564)
chr5 (24-247)||(10603981-10604205)
chr5 (90-246)||(10611006-10611162)
chr5 (27-248)||(10747770-10747992)
chr5 (28-225)||(10741477-10741675)
chr5 (28-225)||(10763911-10764109)
chr5 (89-225)||(10717718-10717854)
chr5 (89-225)||(10601150-10601286)
chr5 (89-248)||(10564322-10564481)
chr5 (25-225)||(9837106-9837307)
chr5 (89-243)||(7192300-7192454)
chr5 (89-231)||(10652971-10653113)
chr5 (89-206)||(19606662-19606779)
chr5 (26-225)||(10558151-10558351)
chr5 (115-243)||(10660845-10660973)
chr5 (95-228)||(10550094-10550227)
chr5 (89-225)||(10589205-10589341)
[»] chr2 (1 HSPs)
chr2 (89-225)||(17924181-17924317)
[»] chr6 (5 HSPs)
chr6 (89-225)||(12906485-12906621)
chr6 (46-225)||(12931530-12931710)
chr6 (46-225)||(12947895-12948075)
chr6 (89-225)||(12898865-12899001)
chr6 (89-225)||(12957373-12957509)
[»] chr3 (1 HSPs)
chr3 (52-225)||(31467940-31468114)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 10217731 - 10217504
Alignment:
Q  19 ttggcatgctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatcatattggtgaatgcgtaagcttggaatacctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  10217731 ttggcatgctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatcat--tggtgaatgcgtaagcttggaatacctt 10217634  T
Q  119 catttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10217633 catttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggat 10217534  T
Q  219 caattccaaatgtcatacagaatatctctg 248  Q
    ||||||||||||||||||||||||||||||    
T  10217533 caattccaaatgtcatacagaatatctctg 10217504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 11049564 - 11049415
Alignment:
Q  96 aatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacct 195  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11049564 aatgcgtaagcttcgaataccttctcttgcaagggaactccttcaatggaacaataccgtcctctttggcttcgctcaaaggtcttttatatttagacct 11049465  T
Q  196 ttccagaaatcaattttatggatcaattccaaatgtcatacagaatatct 245  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  11049464 ttctagaaatcaattttatggatcaattccaaatgttatacagaatatct 11049415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 10603981 - 10604205
Alignment:
Q  24 atgctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatca-tattggtgaatgcgtaagcttggaataccttcatt 122  Q
    |||||||||||||||| |  | ||||||| ||||||||| || ||| ||| || ||||||   | ||||||||||||| ||||||| |||||||||| ||    
T  10603981 atgctaaaaaatattgattggttagatgtctctgaaaatcatttgtgtggggagattcctggaactattggtgaatgcataagcttagaataccttcgtt 10604080  T
Q  123 tgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaat 222  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||   |||||||||  |||| ||||||||||| |||||| ||||    
T  10604081 tgcaagggaactcattcaacggaacaataccatcctcttttgcttctctcaaaggtctacaatatttagatatttcaagaaatcaattgtatggaccaat 10604180  T
Q  223 tccaaatgtcatacagaatatctct 247  Q
    |||  ||||  | ||||||||||||    
T  10604181 tcctgatgttttgcagaatatctct 10604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 10611006 - 10611162
Alignment:
Q  90 ttggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatattt 189  Q
    ||||||||||  |||| || |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||  ||||||    
T  10611006 ttggtgaatgtataagtttagaataccttcttttgcaaggtaactccttcaatggaacaataccttcctctttggcttctctcaaaggtcttcgatattt 10611105  T
Q  190 agacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctc 246  Q
    ||||||||| | ||||||||| | ||||||||||||  |||| || ||| |||||||    
T  10611106 agacctttcaacaaatcaattgtctggatcaattcctgatgttatgcaggatatctc 10611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 10747992 - 10747770
Alignment:
Q  27 ctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatcata-ttggtgaatgcgtaagcttggaataccttcatttgc 125  Q
    ||||||||||||| |  ||||||||| ||||| ||| |||| | ||||||||||||||  | | ||||||| |||  |  ||| |||||||||||  |||    
T  10747992 ctaaaaaatattgattggctagatgtctctgagaatcatctatctggtgatattcctacaacaattggtgattgcacagccttagaataccttcacctgc 10747893  T
Q  126 aagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||  | ||||||||||||| ||||||| ||| | ||| ||||||||    
T  10747892 aagggaactccttcaatggaacaataccatcctctttggcttctctcgaaggtcttcaacatttagacctttcaagaaatcgattgtctgggtcaattcc 10747793  T
Q  226 aaatgtcatacagaatatctctg 248  Q
      |||| || || ||||||||||    
T  10747792 tgatgttatgcaaaatatctctg 10747770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 10741675 - 10741477
Alignment:
Q  28 taaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatcata-ttggtgaatgcgtaagcttggaataccttcatttgca 126  Q
    ||||||||||||  | ||||||| | ||||| |||  ||| | ||||||||||||||  | | |||||||||||  || ||| ||||||||||| |||||    
T  10741675 taaaaaatattgacatgctagatctatctgagaatcgtctatctggtgatattcctagaacaattggtgaatgcacaaccttagaataccttcaattgca 10741576  T
Q  127 agggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||  |  |||||||||||| ||||||||||| | ||||||||||||    
T  10741575 agggaactccttcagcggaacaataccatcctctatggcttctctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcc 10741477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 10764109 - 10763911
Alignment:
Q  28 taaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatcata-ttggtgaatgcgtaagcttggaataccttcatttgca 126  Q
    ||||||||||||  | ||| ||| | ||||| ||| |||| | ||||||||||||||  | | |||||||||||  || ||| ||||||||||| |||||    
T  10764109 taaaaaatattgacatgctggatctatctgagaatcatctatctggtgatattcctaaaacaattggtgaatgcacaaccttagaataccttcaattgca 10764010  T
Q  127 agggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||||||||||||  |||||||||||||||||| ||||||| ||||||||||||  |  |||||||||||| ||||||||||| | ||||||||||||    
T  10764009 agggaactccttcagcggaacaataccatcctctatggcttctctcaaaggtcttcaaagtttagacctttcaagaaatcaattgtctggatcaattcc 10763911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 10717854 - 10717718
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||| | ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| | | |   |||||    
T  10717854 attggtgaatgcatgagcttggaatatcttcatttggaagggaactccatcaatggaacaataccatcctctttggcttctctcaaggctttaagatatt 10717755  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    |||||||||| ||||||||||| || ||| |||||||    
T  10717754 tagacctttcaagaaatcaattgtacggaccaattcc 10717718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 10601150 - 10601286
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    ||||||||||  |||||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||| | |||||||||||   |||||    
T  10601150 attggtgaatatgtaagcttagaataccttcatttgcaagagaattctttcaacggaacaataccatcctctttggctgctctcaaaggtctacaatatt 10601249  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||  |||| ||||||||||| |||||| |||||||    
T  10601250 tagatatttcaagaaatcaattgtatggaccaattcc 10601286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 10564322 - 10564481
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    ||||| |||||  ||||||| ||||| |||   |||||||||||| |||||||  |||||||||| |||||| ||||||| ||||||||||||  |||||    
T  10564322 attggcgaatgtataagcttagaatatcttatgttgcaagggaacgccttcaacagaacaataccgtcctctatggcttctctcaaaggtcttcgatatt 10564421  T
Q  189 tagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatatctctg 248  Q
    |||||||||| ||||||||||| | ||||||||||||  |||| || || ||||||||||    
T  10564422 tagacctttcaagaaatcaattgtctggatcaattcctgatgttatgcaaaatatctctg 10564481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 9837307 - 9837106
Alignment:
Q  25 tgctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatca-tattggtgaatgcgtaagcttggaataccttcattt 123  Q
    ||||||||||||||  |||||||||||| ||||||||| ||||||  ||||| ||||| || |  |||||||||||| |||| || ||||||||||| ||    
T  9837307 tgctaaaaaatattcataagctagatgtctctgaaaatcatctgtcgggtgacattccaataacaattggtgaatgcataagtttagaataccttcactt 9837208  T
Q  124 gcaagggaactc-cttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaat 222  Q
     || |||||||| |||| | ||||| ||||| ||| ||||||| || ||||||| ||||  |||||||||| | || |||||||| || | |||||||||    
T  9837207 acaggggaactctcttc-acggaaccataccttccactttggcatctctcaaagttcttcaatatttagacatgtctagaaatcagttgtctggatcaat 9837109  T
Q  223 tcc 225  Q
    |||    
T  9837108 tcc 9837106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 243
Target Start/End: Original strand, 7192300 - 7192454
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    ||||| |||||| || |||| ||||||||   ||||||||| ||||||||||| ||||| ||||||||||| ||||||||  | ||| |||||  |||||    
T  7192300 attggcgaatgcatacgcttagaatacctctttttgcaaggaaactccttcaacggaaccataccatcctcattggcttcagttaaaagtcttcaatatt 7192399  T
Q  189 tagacctttccagaaatcaattttatggatcaattccaaatgtcatacagaatat 243  Q
    ||||||| || |||||||  || |||||| ||||||| |||||  ||||||||||    
T  7192400 tagacctgtcaagaaatcggttgtatggaccaattcctaatgttctacagaatat 7192454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 10653113 - 10652971
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||| ||  ||| |||||||||  ||||||||||||||| ||||| ||||| || |||||| | |||||||| || |||||||||  |||||    
T  10653113 attggtgaatgcatagtcttagaatacctttctttgcaagggaactcgttcaacggaaccattccatccacattggcttcacttaaaggtcttcaatatt 10653014  T
Q  189 tagacctttccagaaatcaattttatggatcaattccaaatgt 231  Q
    ||||| | || |||||||  || |||||| |||||||||||||    
T  10653013 tagacttgtcaagaaatcggttgtatggaccaattccaaatgt 10652971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 19606779 - 19606662
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||| ||||||| ||||| ||| |||| ||||||||||||||  | ||||  |||||||||||||| ||||| || | |||||||  |||||    
T  19606779 attggtgaatgcataagcttagaatatctttattttcaagggaactcctttcacggaatcataccatcctctttagcttctcttagaggtcttcgatatt 19606680  T
Q  189 tagacctttccagaaatc 206  Q
    ||||||| || |||||||    
T  19606679 tagacctatcaagaaatc 19606662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 225
Target Start/End: Original strand, 10558151 - 10558351
Alignment:
Q  26 gctaaaaaatattggtaagctagatgtttctgaaaataatctgtttggtgatattcctatca-tattggtgaatgcgtaagcttggaataccttcatttg 124  Q
    |||||||||||||  |||||||||| | ||||| |||||| ||| |||||| |||||||| |  |||| | |||||  |||||| |||||||||  ||||    
T  10558151 gctaaaaaatattaataagctagatttctctgagaataatttgtctggtgaaattcctataaccattgatcaatgcaaaagcttagaatacctttttttg 10558250  T
Q  125 caagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattc 224  Q
    ||||| || |||||| ||  ||  ||||| |||||||||||||   | | |||||||  |||||||||| | || ||||||||||| | |||||||||||    
T  10558251 caaggaaattccttccatcaaatcataccttcctctttggcttatataagaggtcttcgatatttagacatgtcaagaaatcaattgtctggatcaattc 10558350  T
Q  225 c 225  Q
    |    
T  10558351 c 10558351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 10660973 - 10660845
Alignment:
Q  115 ccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttat 214  Q
    |||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||  |||| ||||| | ||  |||||| ||| | |    
T  10660973 cctttatttgcaagggaactctttcaacggaaccataccatcctcattggcttcacttaaaggtcttcaatatctagacttgtcaggaaatcgattgtct 10660874  T
Q  215 ggatcaattccaaatgtcatacagaatat 243  Q
    ||| | |||||||||||  ||||||||||    
T  10660873 ggaccgattccaaatgttctacagaatat 10660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 10550094 - 10550227
Alignment:
Q  95 gaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatttagacc 194  Q
    |||||| ||||||| |||||||||  ||||  |||||| || ||||||||||  ||||||||||||||||  || ||||||||||||  |   |||||||    
T  10550094 gaatgcttaagcttagaataccttattttgacagggaattcattcaatggaagcataccatcctctttggaatctctcaaaggtcttcgagtgttagacc 10550193  T
Q  195 tttccagaaatcaattttatggatcaattccaaa 228  Q
    | || ||||| ||||| |  ||||||||||||||    
T  10550194 tctcaagaaaccaattatccggatcaattccaaa 10550227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 10589341 - 10589205
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    ||||| || ||| ||| ||| |||||||||||||||||||| |||   |||   ||||||||||| | | ||||||| || ||||||||||||  |||||    
T  10589341 attggggattgcataaacttagaataccttcatttgcaaggaaaccttttcctcggaacaatacctttcactttggcatctctcaaaggtcttcaatatt 10589242  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||| | || |||||||| || | ||||||||||||    
T  10589241 tagacatgtcaagaaatcagttgtctggatcaattcc 10589205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 17924317 - 17924181
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||  ||||||| |||||  ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||  |||||    
T  17924317 attggtgaatgtataagcttagaatatattcatttgcaaaggaactccttcaacggaacaataccgtcctctttggcttctctcaaaggtcttcgatatt 17924218  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  17924217 tagacctttcaagaaatcaattgtctggatcaattcc 17924181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 12906485 - 12906621
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||   |||||| |||||  ||||||||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||||||  |||||    
T  12906485 attggtgaatgtacaagcttagaatatattcatttgcaaaggaactcctttaacggaacaataccgtcctctttggcttctctcaaaggtcttcgatatt 12906584  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    |||||||||| ||||||||||| | ||||||||||||    
T  12906585 tagacctttcaagaaatcaattgtctggatcaattcc 12906621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 12931530 - 12931710
Alignment:
Q  46 tagatgtttctgaaaataatctgtttggtgatattcctatc-atattggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatgg 144  Q
    ||||||| ||||| ||| |||| | ||||||||||||||   | |||||||||||   |||||| |||||  ||||||||||| ||||||||||||| ||    
T  12931530 tagatgtctctgagaatcatctatctggtgatattcctagagaaattggtgaatgtacaagcttagaatatattcatttgcaaaggaactccttcaacgg 12931629  T
Q  145 aacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||||||| ||||||||| |||  ||||||||||||  ||||||||||||||| ||||||||||| | ||||||||||||    
T  12931630 aacaataccgtcctctttgacttttctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcc 12931710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 12947895 - 12948075
Alignment:
Q  46 tagatgtttctgaaaataatctgtttggtgatattcctatc-atattggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatgg 144  Q
    ||||||| ||||| ||| |||| | ||||||||||||||   | |||||||||||   |||||| |||||  ||||||||||| ||||||||||||| ||    
T  12947895 tagatgtctctgagaatcatctatctggtgatattcctagagaaattggtgaatgtacaagcttagaatatattcatttgcaaaggaactccttcaacgg 12947994  T
Q  145 aacaataccatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||||||| ||||||||| |||  ||||||||||||  ||||||||||||||| ||||||||||| | ||||||||||||    
T  12947995 aacaataccgtcctctttgacttttctcaaaggtcttcgatatttagacctttcaagaaatcaattgtctggatcaattcc 12948075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 12898865 - 12899001
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||   |||| | |||||  ||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| || |||||||||  |||||    
T  12898865 attggtgaatgtacaagcatagaatatattcttttgcaaaggaactccttcaacggaacaataccgtcctctttggcttctcttaaaggtcttcaatatt 12898964  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||| |||| ||||||||||| | ||||||||||||    
T  12898965 tagacttttcaagaaatcaattgtctggatcaattcc 12899001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 12957373 - 12957509
Alignment:
Q  89 attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaataccatcctctttggcttcgctcaaaggtcttttatatt 188  Q
    |||||||||||   || ||| |||||  ||| ||||||| |||||  |||||||||||||||||| |||||||| ||||| ||||||||||||  |||||    
T  12957373 attggtgaatgtacaatcttagaatatattcgtttgcaaaggaacatcttcaatggaacaataccgtcctctttagcttctctcaaaggtcttcaatatt 12957472  T
Q  189 tagacctttccagaaatcaattttatggatcaattcc 225  Q
    ||||| |||| ||||||||||| | ||||||||||||    
T  12957473 tagacgtttcaagaaatcaattgtctggatcaattcc 12957509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 31468114 - 31467940
Alignment:
Q  52 tttctgaaaataatctgtttggtgatattcctatcat-attggtgaatgcgtaagcttggaataccttcatttgcaagggaactccttcaatggaacaat 150  Q
    ||||||| |||||||| | ||||||||||||||  |  ||||| ||||||||||||||||| |||||| |||||||||| || |||||| |||||   ||    
T  31468114 tttctgagaataatctatctggtgatattcctagaacgattggggaatgcgtaagcttggagtacctttatttgcaaggaaattccttccatggagtcat 31468015  T
Q  151 accatcctctttggcttcgctcaaaggtcttttatatttagacctttccagaaatcaattttatggatcaattcc 225  Q
    |||| ||||| | ||||| || ||||| |||  | |||||||||| ||  |||| || || | ||||||||||||    
T  31468014 accaacctctctagcttcactgaaaggccttcaacatttagacctatcacgaaaccacttgtctggatcaattcc 31467940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University