View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_43 (Length: 249)
Name: NF20107_low_43
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26265844 - 26266080
Alignment:
| Q |
1 |
acttggaagacaagcatcaagtatgattgttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaa |
100 |
Q |
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| T |
26265844 |
acttggaagacaagcatcaagtatgattgttggagaagagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaa |
26265943 |
T |
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| Q |
101 |
gttcccggctcatttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265944 |
gttcccggctcatttttcctcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttc |
26266043 |
T |
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| Q |
201 |
ccattggtgctgcgatacatgcagcatttgctctttc |
237 |
Q |
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| T |
26266044 |
caattggtgctgcgatacatgcagcatttgctctttc |
26266080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 31837209 - 31836992
Alignment:
| Q |
20 |
agtatgattgttggagaggagaacataaaattagcaccaacctacacagcaagtgaagattttgcattttacttggaaaaagttcccggctcatttttcc |
119 |
Q |
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||||||||||||||||| ||||||||||||||| |||| | | ||||| |||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
31837209 |
agtatgattgttggagaagagaacataaaattatcacccatcgtcacagggagtgaagattttgcattttacttggaaaaagtgcctggctcatttttct |
31837110 |
T |
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| Q |
120 |
tcttaggtatacaaaatgagaaggttggatccatatattcagctcatagtcctcactattttattgatgaagatgttcttcccattggtgctgcgataca |
219 |
Q |
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| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
31837109 |
ttttaggtataaaaaatgaaaagagtggatccatatattcagctcatagtcctcaatttttcattgatgaagatgttcttcccattggtgctgcaataca |
31837010 |
T |
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| Q |
220 |
tgcagcatttgctctttc |
237 |
Q |
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|||||||||||||||||| |
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| T |
31837009 |
tgcagcatttgctctttc |
31836992 |
T |
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