View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_low_46 (Length: 237)

Name: NF20107_low_46
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_low_46
NF20107_low_46
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-221)||(18297-18519)
[»] chr2 (14 HSPs)
chr2 (1-112)||(34949163-34949274)
chr2 (1-145)||(21484520-21484665)
chr2 (14-104)||(5937727-5937817)
chr2 (14-85)||(5937855-5937926)
chr2 (1-70)||(5463710-5463779)
chr2 (1-70)||(15112672-15112741)
chr2 (12-109)||(37127274-37127371)
chr2 (1-70)||(41962404-41962473)
chr2 (14-85)||(34949062-34949133)
chr2 (10-56)||(45536320-45536366)
chr2 (12-84)||(18964072-18964144)
chr2 (14-53)||(5463856-5463895)
chr2 (21-112)||(26414835-26414926)
chr2 (1-86)||(24169049-24169135)
[»] chr3 (21 HSPs)
chr3 (1-112)||(21979215-21979326)
chr3 (1-112)||(22001646-22001757)
chr3 (4-112)||(18876822-18876930)
chr3 (5-144)||(51328223-51328364)
chr3 (1-70)||(47374094-47374163)
chr3 (10-102)||(10493981-10494073)
chr3 (1-112)||(44207084-44207200)
chr3 (1-112)||(9127721-9127837)
chr3 (1-112)||(9135828-9135944)
chr3 (1-112)||(16483547-16483663)
chr3 (1-112)||(30389609-30389725)
chr3 (16-112)||(41973913-41974012)
chr3 (1-112)||(49326643-49326759)
chr3 (1-112)||(48062876-48062992)
chr3 (10-70)||(8485765-8485825)
chr3 (14-112)||(48062748-48062846)
chr3 (14-53)||(9127652-9127691)
chr3 (14-53)||(9135759-9135798)
chr3 (14-53)||(16483478-16483517)
chr3 (12-85)||(33844074-33844147)
chr3 (16-112)||(12718312-12718408)
[»] chr8 (5 HSPs)
chr8 (1-111)||(41835380-41835490)
chr8 (1-112)||(11054-11170)
chr8 (16-104)||(11457575-11457663)
chr8 (24-70)||(24831491-24831537)
chr8 (16-84)||(28285015-28285083)
[»] chr4 (15 HSPs)
chr4 (1-111)||(11648391-11648501)
chr4 (1-112)||(53270075-53270191)
chr4 (1-112)||(45658853-45658969)
chr4 (1-112)||(53512219-53512335)
chr4 (1-112)||(55611713-55611829)
chr4 (1-70)||(47604507-47604576)
chr4 (1-112)||(47985010-47985126)
chr4 (1-110)||(40692305-40692419)
chr4 (1-70)||(52918780-52918849)
chr4 (14-70)||(40761697-40761753)
chr4 (11-80)||(49604925-49604994)
chr4 (24-112)||(34953105-34953193)
chr4 (1-67)||(38989991-38990057)
chr4 (14-53)||(40761830-40761869)
chr4 (14-53)||(55611859-55611898)
[»] chr5 (13 HSPs)
chr5 (1-112)||(5343196-5343312)
chr5 (1-112)||(6431739-6431855)
chr5 (1-112)||(32747537-32747653)
chr5 (11-103)||(24855262-24855359)
chr5 (1-85)||(41615617-41615701)
chr5 (12-112)||(23248158-23248258)
chr5 (24-112)||(23344192-23344280)
chr5 (12-83)||(28335062-28335133)
chr5 (12-85)||(27949315-27949388)
chr5 (24-85)||(23248006-23248067)
chr5 (14-53)||(1709871-1709910)
chr5 (14-53)||(32747468-32747507)
chr5 (14-112)||(6431885-6431983)
[»] chr1 (16 HSPs)
chr1 (5-112)||(7563888-7564000)
chr1 (1-70)||(3474593-3474662)
chr1 (1-85)||(30517713-30517797)
chr1 (14-83)||(7564035-7564104)
chr1 (1-70)||(14271067-14271136)
chr1 (10-112)||(5749246-5749353)
chr1 (1-70)||(39598949-39599018)
chr1 (1-112)||(12524238-12524354)
chr1 (1-68)||(10311925-10311992)
chr1 (1-69)||(4852080-4852148)
chr1 (16-70)||(10222561-10222615)
chr1 (1-48)||(18277275-18277322)
chr1 (14-53)||(12524382-12524421)
chr1 (14-51)||(5749383-5749420)
chr1 (13-102)||(29251394-29251483)
chr1 (14-54)||(3474739-3474779)
[»] chr7 (22 HSPs)
chr7 (1-112)||(1378137-1378248)
chr7 (1-112)||(45490782-45490898)
chr7 (1-102)||(37999370-37999476)
chr7 (1-70)||(43748530-43748599)
chr7 (16-112)||(1852695-1852791)
chr7 (1-112)||(7254720-7254835)
chr7 (1-112)||(26792684-26792800)
chr7 (14-70)||(33849513-33849569)
chr7 (1-70)||(109427-109496)
chr7 (1-112)||(38256796-38256912)
chr7 (1-112)||(38264371-38264487)
chr7 (16-112)||(35584405-35584506)
chr7 (1-63)||(15031930-15031992)
chr7 (12-85)||(19647511-19647584)
chr7 (12-88)||(26187627-26187703)
chr7 (12-109)||(19647682-19647779)
chr7 (16-112)||(7254867-7254963)
chr7 (61-112)||(31326164-31326215)
chr7 (16-111)||(33849340-33849435)
chr7 (14-53)||(38256943-38256982)
chr7 (14-53)||(38264518-38264557)
chr7 (43-112)||(24686869-24686936)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-103)||(16285-16392)
[»] chr6 (8 HSPs)
chr6 (14-71)||(13037623-13037680)
chr6 (21-112)||(17520404-17520495)
chr6 (24-102)||(25137977-25138055)
chr6 (12-112)||(20819232-20819332)
chr6 (14-53)||(13037508-13037547)
chr6 (12-86)||(28547519-28547593)
chr6 (12-81)||(19624615-19624684)
chr6 (12-84)||(12304602-12304673)
[»] scaffold0160 (1 HSPs)
scaffold0160 (11-82)||(16672-16743)
[»] scaffold0001 (1 HSPs)
scaffold0001 (12-84)||(426639-426711)


Alignment Details
Target: scaffold0054 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18297 - 18519
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  18297 cacaccgaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgtgatgaagatc 18396  T
Q  101 ttcaacatgctgnnnnnnntacaaacaa--acaccaaagaaaccataannnnnnnngtctctatgctaatgatctttctcattttgttttaaatgacatg 198  Q
    ||||||||||||       |||||||||  ||||||||||||||||||        |||  | |||| |||||||||||||||| |||||||||||||||    
T  18397 ttcaacatgctgaaaaaaatacaaacaaacacaccaaagaaaccataattttttttgtcattgtgctgatgatctttctcatttggttttaaatgacatg 18496  T
Q  199 atgaagatcttcatgctgtaaaa 221  Q
    ||||||||| |||||||||||||    
T  18497 atgaagatcctcatgctgtaaaa 18519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34949274 - 34949163
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||| |||    
T  34949274 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacattgtcgtaaatagatagctctctatttgacagcgtgatgaagatc 34949175  T
Q  101 ttcaacatgctg 112  Q
    |||| |||||||    
T  34949174 ttcagcatgctg 34949163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 21484520 - 21484665
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||  |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| | |||||| ||| |||||| |||    
T  21484520 cacaccacagaaaaccatgcaaatttt-gtcattaagttgaggatttttctcacgtggtcgcaaatagatagctctttgtttgaccgcgtgatgaagatc 21484618  T
Q  101 ttcaacatgctgnnnnnnntacaaacaa--acaccaaagaaaccata 145  Q
    ||||||||||||       |||||||||  |||||||||||||||||    
T  21484619 ttcaacatgctgtaaaaaatacaaacaaacacaccaaagaaaccata 21484665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 5937727 - 5937817
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttca 104  Q
    ||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||    
T  5937727 accatgcaaatttttatcattaagttgatgatctttctcacgttgtcgcaaatagatagctctctatttgacggcgtgatgaagatcttca 5937817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 5937855 - 5937926
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  5937855 accattcaaatttttgtcattaagcggaggatctttctcacgcggtcgcaaatagatagctctctatttgac 5937926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5463710 - 5463779
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  5463710 cacaccaaagaaaaccatgcatatttttgtcattaagctgaggatctttctcatgcggtcgcaaatagat 5463779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15112672 - 15112741
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  15112672 cacaccaaagaaaaccatgcaaatttttgtcattaagttgaggatcttcctcacgttgtcgcaaatagat 15112741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 37127274 - 37127371
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatg 109  Q
    |||||||| ||||||||| ||||  | ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||||| ||||||| ||||    
T  37127274 aaaccatgtaaatttttgccattgtgttgaggatctttctcacgcggtcgcaaatagatagctctctatttgactgcatgatgaagatcttcagcatg 37127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 41962473 - 41962404
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||    
T  41962473 cacaccaaagaaaaccatgcaaacttttgtcattaagctgaggatctttctcatgcggtcgcaaatagat 41962404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 34949133 - 34949062
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    ||||||||||||||| ||||||||| || ||||||||||||  | |||||||||||||||||||||||||||    
T  34949133 accatgcaaatttttttcattaagcagatgatctttctcacccgatcgcaaatagatagctctctatttgac 34949062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 45536366 - 45536320
Alignment:
Q  10 gaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgt 56  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||    
T  45536366 gaaaaccatgcaaatttttgtcattaagctgaagatctttatcacgt 45536320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18964144 - 18964072
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttga 84  Q
    |||||||||||||||||||||||  ||||| ||||||||| | |   |||||||||||| |||||||||||||    
T  18964144 aaaccatgcaaatttttgtcattgtgctgaagatctttctaatgctatcgcaaatagattgctctctatttga 18964072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 5463856 - 5463895
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  5463856 accatgcaaatttttgtcattgtgctgaggatctttctca 5463895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 26414835 - 26414926
Alignment:
Q  21 aaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||||||| |||||  ||| | ||||||||||| || ||| ||||||| || ||||||||||||| ||  |||||| || ||||||||||||    
T  26414835 aaatttttatcattgtgctaaagatctttctcatgttgtcacaaataggtaactctctatttgacggcatgatgaagatattcaacatgctg 26414926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24169135 - 24169049
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgc-aaatagatagctctctatttgaca 86  Q
    |||||||  |||||||||| || |||||||||||  ||||||||||||| ||| |  | ||| |||||||||||||||||| |||||    
T  24169135 cacaccatagaaaaccatgaaattttttgtcattgtgctgaggatctttgtcatgctgccgcaaaatagatagctctctatgtgaca 24169049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21979215 - 21979326
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||  ||| |||||| |||    
T  21979215 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgcggttgcaaatagatagttctctatttgattgcgtgatgaagatc 21979314  T
Q  101 ttcaacatgctg 112  Q
    |||| |||||||    
T  21979315 ttcagcatgctg 21979326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22001646 - 22001757
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||  ||| |||||| |||    
T  22001646 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgcggttgcaaatagatagttctctatttgattgcgtgatgaagatc 22001745  T
Q  101 ttcaacatgctg 112  Q
    |||| |||||||    
T  22001746 ttcagcatgctg 22001757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 18876930 - 18876822
Alignment:
Q  4 accaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttc 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||| ||| |||||| ||||||    
T  18876930 accaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgcggtcgtaaatagattgttctctatttgactgcgtgatgaagatcttc 18876831  T
Q  104 aacatgctg 112  Q
    | |||||||    
T  18876830 agcatgctg 18876822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 51328223 - 51328364
Alignment:
Q  5 ccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttca 104  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  || ||| |||||| |||||||    
T  51328223 ccaaagaaaaccaagcaaatttttgtcattaagttgaggatctttctcacgtggtcgcaaatagataactctctattgaaccgcgtgatgaagatcttca 51328322  T
Q  105 acatgctgnnnnnnntacaaacaa--acaccaaagaaaccat 144  Q
     |||||||       |||||||||  ||||||||||||||||    
T  51328323 gcatgctgtcaaaaatacaaacaaacacaccaaagaaaccat 51328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47374094 - 47374163
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47374094 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatgtggtcgcaaatagat 47374163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 10493981 - 10494073
Alignment:
Q  10 gaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatctt 102  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||  || |||||| |||||    
T  10493981 gaaaaccatgcaaatttttgtcattaagctgatgatctttctcacacggtcgcaaatagataactctctatttgactacgtgatgaagatctt 10494073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44207084 - 44207200
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||     |||||||||||||||| ||  |||||    
T  44207084 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatgcggtcgcaaatagatgagttagctctctatttgactgcatgatga 44207183  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  44207184 agatcctcagcatgctg 44207200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9127837 - 9127721
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||     |||||||||||||||| ||  |||||    
T  9127837 cacaccaaagaaaaccatgcaaatttttgtcattaagttgaggatctttctcatgccgtcgcaaatagatgaattagctctctatttgacggcatgatga 9127738  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||| |||||||    
T  9127737 agatcttcagcatgctg 9127721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9135944 - 9135828
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||     |||||||||||||||| ||  |||||    
T  9135944 cacaccaaagaaaaccatgcaaatttttgtcattaagttgaggatctttctcatgccgtcgcaaatagatgaattagctctctatttgacggcatgatga 9135845  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||| |||||||    
T  9135844 agatcttcagcatgctg 9135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 16483663 - 16483547
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||     || ||||||||||||| ||  |||||    
T  16483663 cacaccaaagaaaaccatgcaaatttttgtcattaagctgatgatctttctcatgcggtcgcaaatagatgagttaactctctatttgactgcatgatga 16483564  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  16483563 agatcctcaacatgctg 16483547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30389725 - 30389609
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||     |||||||||||||||| ||  |||||    
T  30389725 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatacagtcgcaaatagatgagttagctctctatttgactgcatgatga 30389626  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  30389625 agatcctcaacatgctg 30389609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 41973913 - 41974012
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat---agatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||||||   || |||||||||||||||||||| |||||| ||||||  |||||||    
T  41973913 catgcaaatttttatcattaagctgaggatcttcctcacgttgtcgcaaatatgagttagctctctatttgacagcgtgatgaagatcttctgcatgctg 41974012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 49326643 - 49326759
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatga 95  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||     || |||||||||||||||| ||| |||||    
T  49326643 cacaacaaagaaaaccatgcaaatttttgtcattaagctgaggatcttccccacgttgtcgcaaatatatgagttagctctctatttgacggcgtgatga 49326742  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||  |||||||    
T  49326743 agatcttctccatgctg 49326759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 48062992 - 48062876
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatga 95  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||| |||| || |||||||||     || |||||||||||||||| ||| |||||    
T  48062992 cacaacaaagaaaaccatgcaaatttttgtcattaagttgaggatcttcctcatgttgtcgcaaatatatgagttagctctctatttgacggcgtgatga 48062893  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||  |||||||    
T  48062892 agatcttctgcatgctg 48062876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 8485765 - 8485825
Alignment:
Q  10 gaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  8485765 gaaaaccatgcacatttttgtcattaagctaaggatcttcctcacgttgtcgcaaatagat 8485825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 48062846 - 48062748
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    ||||| |||||||||||||||| ||||||||||||||||| || ||   ||||| |||| ||||||| | |||||  |||||| ||| ||| |||||||    
T  48062846 accattcaaatttttgtcattatgctgaggatctttctcatgttgttttaaatatatagttctctatataacagcatgatgaagatcatcagcatgctg 48062748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 9127691 - 9127652
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  9127691 accatgcaaatttttgtcattgtgctgaggatctttctca 9127652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 9135798 - 9135759
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  9135798 accatgcaaatttttgtcattgtgctgaggatctttctca 9135759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 16483517 - 16483478
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  16483517 accatgcaaatttttgtcattgtgctgaggatctttctca 16483478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 33844147 - 33844074
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    |||||||| ||||||||||||||  ||||||||||| ||  | || ||| |||||||||| ||||| |||||||    
T  33844147 aaaccatggaaatttttgtcattgtgctgaggatctatccaatgttgtcccaaatagatatctctccatttgac 33844074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 12718408 - 12718312
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||| ||||||||||||||  | | ||||||| ||||| || ||||||||||||  |||||||| ||| | ||  |||||| ||||||| |||||||    
T  12718408 catggaaatttttgtcattgtgttcaggatctctctcatgttgtcgcaaatagaacgctctctaattggcggcatgatgaagatcttcagcatgctg 12718312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41835490 - 41835380
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||| ||| |||||| |||    
T  41835490 cacaccaaagaaaaccatgcaattttttgtcattaagctgaggatttttctcatgttgtcgcaaatatatagctctctatttgacggcgtgatgaagatc 41835391  T
Q  101 ttcaacatgct 111  Q
    | || ||||||    
T  41835390 tacatcatgct 41835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11054 - 11170
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatga 95  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||     || ||| |||||||||||| ||| |||||    
T  11054 cacaacaaagaaaaccatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcgcaaatatatgagttagttctctatttgacggcgtgatga 11153  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||  |||||||    
T  11154 agatcttctgcatgctg 11170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 11457663 - 11457575
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttca 104  Q
    |||| |||||||||||| |  |||||||||||| |||| |  ||||||||||||| |||||||||||||||||| |||||| |||||||    
T  11457663 catggaaatttttgtcaatgtgctgaggatcttcctcatgctgtcgcaaatagattgctctctatttgacagcgtgatgaagatcttca 11457575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 24831537 - 24831491
Alignment:
Q  24 tttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||    
T  24831537 tttttgtcattaagctgaggatctttctcatgcggtcgcaaatagat 24831491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 28285083 - 28285015
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttga 84  Q
    |||| ||||| ||||||||  | ||| ||||| ||||| | |||||||||||||||||||| |||||||    
T  28285083 catggaaattgttgtcattgtgttgaagatctctctcatgcggtcgcaaatagatagctctttatttga 28285015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 11648501 - 11648391
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||| || |||||||||| ||||||||||||||||| ||| |||||| |||    
T  11648501 cacaccaaagaaaaccatgcaattttttgtcattaagctgaggatttttctcatgttgtcgcaaatatatagctctctatttgacggcgtgatgaagatc 11648402  T
Q  101 ttcaacatgct 111  Q
    | || ||||||    
T  11648401 tacatcatgct 11648391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 53270191 - 53270075
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||     || ||||||||||||| ||| |||||    
T  53270191 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcgtaaatagatgagttaactctctatttgacggcgtgatga 53270092  T
Q  96 acatcttcaacatgctg 112  Q
    | |||||| ||||||||    
T  53270091 agatcttctacatgctg 53270075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45658853 - 45658969
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||     |||||||||||||||| ||  |||||    
T  45658853 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatcttcctcatgttgtcgtaaatagatgagttagctctctatttgacggcatgatga 45658952  T
Q  96 acatcttcaacatgctg 112  Q
    ||||||||  |||||||    
T  45658953 acatcttctgcatgctg 45658969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 53512335 - 53512219
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||     |||||||||||||||  ||  |||||    
T  53512335 cacaccaaagaaaaccatgcaaatttttgtcattaagctaaggatctttctcatgcggtcgcaaatagacgagttagctctctatttgattgcatgatga 53512236  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  53512235 agatcctcaacatgctg 53512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 55611713 - 55611829
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||     || ||||||||||||| ||  |||||    
T  55611713 cacaccaaagaaaaccatgcaaatttttgtcattaagctgatgatctttctcatgcggtcgcaaatagatgagttaactctctatttgactgcatgatga 55611812  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  55611813 agatcctcaacatgctg 55611829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47604576 - 47604507
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  47604576 cacatcaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatgcggtcgcaaatagat 47604507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 47985010 - 47985126
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||     || |||||||||||||||| ||  |||||    
T  47985010 cacaccaaagaaaaccatgcaaatttttgtcattaagttgaggatctttctcatgcggtcgcaaataaatgagttagctctctatttgactgcttgatga 47985109  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  47985110 agatcctcagcatgctg 47985126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40692305 - 40692419
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat-----agctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||     || |||||||||||| ||  |||||    
T  40692305 cacaccaaagaaaaccatttaaatttttgtcattaagttgaggatctttctcatgtggtcgcaaatagattagttagttctctatttgactgcatgatga 40692404  T
Q  96 acatcttcaacatgc 110  Q
    | ||| |||||||||    
T  40692405 agatcctcaacatgc 40692419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52918780 - 52918849
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||    
T  52918780 cacaacaaagaataccatgcaaatttttgtcattaagctgaggatattcctcacgttgtcgcaaatagat 52918849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 40761697 - 40761753
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    ||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||    
T  40761697 accatgcaattttttgtcattaagctgaggatctttctcttgcggtcgcaaatagat 40761753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 49604994 - 49604925
Alignment:
Q  11 aaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctat 80  Q
    ||||||||| ||||||||||||||| ||| | ||||||| ||| | ||||||||||| ||||||||||||    
T  49604994 aaaaccatggaaatttttgtcattatgctaaagatctttttcatgaggtcgcaaataaatagctctctat 49604925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 34953105 - 34953193
Alignment:
Q  24 tttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||||||||||  ||||| ||||||||| | | ||||||||||||| | ||||||||||||| ||  |||||| ||||||| |||||||    
T  34953105 tttttgtcattgtgctgaagatctttcttatgcggtcgcaaatagacaactctctatttgactgcatgatgaagatcttcagcatgctg 34953193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38989991 - 38990057
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaata 67  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| || || ||||||| |||| |||||    
T  38989991 cacaacaaagaataccatgcaaatttttgtcattaagctgagtattttcctcacgttgtcgtaaata 38990057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 40761830 - 40761869
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  40761830 accatgcaaatttttgtcattgtgctgaggatctttctca 40761869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 55611859 - 55611898
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  55611859 accatgcaaatttttgtcattgtgctgaggatctttctca 55611898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 5343196 - 5343312
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     || ||||||||||||| ||  |||||    
T  5343196 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgcgatcgcaaatagatgagttatctctctatttgactgcatgatga 5343295  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  5343296 agatcctcaacatgctg 5343312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 6431739 - 6431855
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||     |||||||||||||||| ||  |||||    
T  6431739 cacaccaaagaaaatcatgcaaatttttgtcattaagctgaggatctttctcatgcggtcgcaaatagatgagttagctctctatttgactgcatgatga 6431838  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  6431839 agatcctcagcatgctg 6431855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 32747653 - 32747537
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||     || ||||||||||||| ||  |||||    
T  32747653 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatgcggttgcaaatagatgaggtatctctctatttgactgcatgatga 32747554  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  32747553 agatcctcaacatgctg 32747537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 24855262 - 24855359
Alignment:
Q  11 aaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatgaacatcttc 103  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||||||     || |||||||||||||||||||| |||||| ||||||    
T  24855262 aaaaccatgcaaatttttgtcattaagctgaggatcttcctgacgttgtcgcaaataaatgagttagctctctatttgacagcgtgatgaagatcttc 24855359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 41615617 - 41615701
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    ||||| || ||||||||  ||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||    
T  41615617 cacacgaaagaaaaccacacaaatttttgtcattaagcggaggatctttctcacgcggtcgaaaatagaaagctctctatttgac 41615701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 23248258 - 23248158
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgct 111  Q
    |||||||| ||||||||||||||  | ||||||||||||||| | | ||| ||||||||| ||||||||||||  ||  |||||| ||||||||||||||    
T  23248258 aaaccatggaaatttttgtcattgtgatgaggatctttctcatgcgatcgtaaatagatatctctctatttgattgcatgatgaagatcttcaacatgct 23248159  T
Q  112 g 112  Q
    |    
T  23248158 g 23248158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 23344192 - 23344280
Alignment:
Q  24 tttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||||||||||  ||||||||||||||||| || || ||||||||||| | || |||||||| ||  |||||| |||||||||||||||    
T  23344192 tttttgtcattgtgctgaggatctttctcatgttgttgcaaatagataacactttatttgacggcatgatgaagatcttcaacatgctg 23344280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 28335133 - 28335062
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttg 83  Q
    |||||||| ||||||||||||||  | ||||||||||  ||| | |||||||||||||||||||||||||||    
T  28335133 aaaccatggaaatttttgtcattgtgttgaggatcttaatcatgcggtcgcaaatagatagctctctatttg 28335062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 27949388 - 27949315
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    |||||||| || |||||||||||  ||||| ||||||||| | || ||||||||||||| ||||||||||||||    
T  27949388 aaaccatgaaattttttgtcattgtgctgaagatctttctaatgttgtcgcaaatagattgctctctatttgac 27949315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 23248067 - 23248006
Alignment:
Q  24 tttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    |||||||||||  ||||||||||| ||| | || ||||||||||||||||||| ||||||||    
T  23248067 tttttgtcattgtgctgaggatctatctaatgttgtcgcaaatagatagctctttatttgac 23248006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 1709871 - 1709910
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  1709871 accatgcaaatttttgtcattgtgctgaggatctttctca 1709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 32747507 - 32747468
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  32747507 accatgcaaatttttgtcattgtgctgaggatctttctca 32747468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 6431885 - 6431983
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    ||||||||||||||||||||   ||||||||||||||||| || ||   ||||| |||| ||||||| | ||| |  |||||| ||| |||||||||||    
T  6431885 accatgcaaatttttgtcatcgtgctgaggatctttctcatgttgttttaaatatatagatctctatataacaacatgatgaagatcctcaacatgctg 6431983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 7563888 - 7564000
Alignment:
Q  5 ccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatgaacat 99  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||     |||||||||||||||| ||| |||||| ||    
T  7563888 ccaaagaaaaccatgcaaattcttgtcattaagctgaggatctttctcacacggtcgcaaatagatgagttagctctctatttgactgcgtgatgaagat 7563987  T
Q  100 cttcaacatgctg 112  Q
    ||||| |||||||    
T  7563988 cttcagcatgctg 7564000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3474593 - 3474662
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  3474593 cacaccaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcatgcggtcgcaaatagat 3474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30517713 - 30517797
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||| ||||||||    
T  30517713 cacaccaaagaaaatcatgcaaatttttgtcattaagctgaggatctttttcacgcggtcgcaaatagaaaactctttatttgac 30517797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 7564035 - 7564104
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttg 83  Q
    ||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||||||||||||||    
T  7564035 accatgcaaatttttgtcattaagcggatgatctttctcacgctgtcgcaaatagatagctctctatttg 7564104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14271136 - 14271067
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14271136 cacacaaaagaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgcagtcgcaaatagat 14271067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 5749246 - 5749353
Alignment:
Q  10 gaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatgaacatcttca 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||     || |||||||||||||||| ||| |||||| ||||||     
T  5749246 gaaaaccatgcaaatttttgtcattaagctgaggatcttcctcacgttgccgcaaatatatgagttagctctctatttgacggcgtgatgaagatcttct 5749345  T
Q  105 acatgctg 112  Q
     |||||||    
T  5749346 gcatgctg 5749353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39599018 - 39598949
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||||||    
T  39599018 cacaccaaagaaaaccatgcaattttttgtcattaagctcaggatctttctcatgcggtcgcaaatagat 39598949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12524238 - 12524354
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaat-----agatagctctctatttgacagcgggatga 95  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||     || || ||||||||||||| ||| |||||    
T  12524238 cacaacaaagaaaaccatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcacaaatatatgagttaactctctatttgacggcgtgatga 12524337  T
Q  96 acatcttcaacatgctg 112  Q
    | ||||||  |||||||    
T  12524338 agatcttctgcatgctg 12524354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10311925 - 10311992
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatag 68  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  10311925 cacaacaaagaaaaccatgcaaatttttgtcattaagctgaggatcttccccacgttgtcgcaaatag 10311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4852148 - 4852080
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga 69  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  4852148 cacaacaaagaaaagcatgcaaatttttgtcattaagctgaggatcttcctcacgttgttgcaaataga 4852080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10222561 - 10222615
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||||||||||||||||||||||||| |||||| |||| || |||||||||||||    
T  10222561 catgcaaatttttgtcattaagctgatgatcttcctcatgttgtcgcaaatagat 10222615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18277322 - 18277275
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctt 48  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||    
T  18277322 cacaacaaagaaaaccatgcaaatttttgtcattaagccgaggatctt 18277275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 12524382 - 12524421
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  12524382 accatgcaaatttttgtcattgtgctgaggatctttctca 12524421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 5749383 - 5749420
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttct 51  Q
    |||||||||||||||||||||  |||||||||||||||    
T  5749383 accatgcaaatttttgtcattgtgctgaggatctttct 5749420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 29251483 - 29251394
Alignment:
Q  13 aaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatctt 102  Q
    ||||||| || |||||||||||  ||||| |||||||||||    ||||||||||||  |||||||||||||| ||  |||||| |||||    
T  29251483 aaccatgaaattttttgtcattgtgctgaagatctttctcatactgtcgcaaatagagtgctctctatttgacggcatgatgaagatctt 29251394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 3474739 - 3474779
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcac 54  Q
    |||||||||||||||||||||  | ||||||||||||||||    
T  3474739 accatgcaaatttttgtcattgtgttgaggatctttctcac 3474779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1378248 - 1378137
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatc 100  Q
    |||||||| ||||||||||||||||||||||||||| |  | |||||||||| |  | || |||||||||||||||||||||||| ||| |||||| |||    
T  1378248 cacaccaaagaaaaccatgcaaatttttgtcattaaacatatgatctttctctcacgatcacaaatagatagctctctatttgactgcgtgatgaagatc 1378149  T
Q  101 ttcaacatgctg 112  Q
    |||| |||||||    
T  1378148 ttcagcatgctg 1378137  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45490898 - 45490782
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||||     |||||||||||||||| ||  |||||    
T  45490898 cacaccaaagaaaatcatgcaaatttttgtcattaagctgaggatctttctcatgcagtcgcaaatagatgatttagctctctatttgactgcatgatga 45490799  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  45490798 agatcctcagcatgctg 45490782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 37999476 - 37999370
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat-----agctctctatttgacagcgggatga 95  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||     || |||||||||||| ||| |||||    
T  37999476 cacaccaaagaaaatcatgcaaatttttgtcattaagccgaggatcttcctcacgttgtcgcaaatagatgagttagttctctatttgacggcgtgatga 37999377  T
Q  96 acatctt 102  Q
    | |||||    
T  37999376 agatctt 37999370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43748530 - 43748599
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  43748530 cacaacaaagaataccatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcgcaaatagat 43748599  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 1852791 - 1852695
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||| ||| ||||||||||  |||||||||||| |||| | |||||||||||||| |||||||||||||| ||  |||||| |||||||||||||||    
T  1852791 catggaaaattttgtcattgtgctgaggatcttcctcatgcggtcgcaaatagattgctctctatttgactgcatgatgaagatcttcaacatgctg 1852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7254720 - 7254835
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||     |||||| ||||||||| ||  |||||    
T  7254720 cacaccaaagaaaaccatgcaaatttttgtcattaagttgaggatctttctca-gcggtcacaaatagatgagttagctccctatttgactgcatgatga 7254818  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| |||||||||||    
T  7254819 agatcctcaacatgctg 7254835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26792800 - 26792684
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||||||   |||||||||||||     |||||||||||||||| ||  |||||    
T  26792800 cacaccaaagaaaaccatgcaaatttttgtcattaagttgtggatctttctcattcggtcgcaaatagataagttagctctctatttgactgcatgatga 26792701  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  26792700 agatcctcagcatgctg 26792684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 33849569 - 33849513
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  33849569 accatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcgcaaatagat 33849513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 109496 - 109427
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagat 70  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  109496 cacaacaaagaaaatcatgcaaatttttgtcattaagctgaggatcttcctcacgttgtcacaaatagat 109427  T

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Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38256796 - 38256912
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||| ||| ||| |||||||||||||  ||||||||||||||||||||||||| | |||||||||||||     |||||||||||||||| ||  |||||    
T  38256796 cacaacaaagaataccatgcaaatttaagtcattaagctgaggatctttctcatgcggtcgcaaatagatgagttagctctctatttgactgcatgatga 38256895  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  38256896 agatcctcagcatgctg 38256912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 38264371 - 38264487
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||| ||| ||| |||||||||||||  ||||||||||||||||||||||||| | |||||||||||||     |||||||||||||||| ||  |||||    
T  38264371 cacaacaaagaataccatgcaaatttaagtcattaagctgaggatctttctcatgcggtcgcaaatagatgagttagctctctatttgactgcatgatga 38264470  T
Q  96 acatcttcaacatgctg 112  Q
    | ||| ||| |||||||    
T  38264471 agatcctcagcatgctg 38264487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 35584405 - 35584506
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatgaacatcttcaacatgc 110  Q
    |||||||||||||||||||||| ||| ||||||||||| | |||||||||||||     |||||||||||||||| ||  |||||| ||| ||| |||||    
T  35584405 catgcaaatttttgtcattaagatgaagatctttctcatgcggtcgcaaatagatgagttagctctctatttgactgcatgatgaagatcctcagcatgc 35584504  T
Q  111 tg 112  Q
    ||    
T  35584505 tg 35584506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15031930 - 15031992
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgca 63  Q
    |||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||    
T  15031930 cacaacaaagaaaaccatgcaaatttttctcattaagttgaggatcttcctcacgttgtcgca 15031992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19647584 - 19647511
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgac 85  Q
    ||||||||||| |||||||||||  ||||| ||| | ||| | || ||||||||||||||||||||||||||||    
T  19647584 aaaccatgcaattttttgtcattgtgctgaagatttatctaatgttgtcgcaaatagatagctctctatttgac 19647511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 26187627 - 26187703
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagc 88  Q
    |||| ||||||||||||||||||  ||||||| |||  || | || ||||||||||||||||||||||||| |||||    
T  26187627 aaactatgcaaatttttgtcattgtgctgagggtctacctaatgttgtcgcaaatagatagctctctatttaacagc 26187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 19647779 - 19647682
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatg 109  Q
    |||||||| ||| ||||||||||  |||||||||||| |||| || || |||||||||| ||| | | ||||||| |  |||||| ||||||||||||    
T  19647779 aaaccatgtaaacttttgtcattgtgctgaggatcttcctcatgttgttgcaaatagattgctttttgtttgacatcatgatgaagatcttcaacatg 19647682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 7254867 - 7254963
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||||||||||||||||||  ||||||||||||||||| || ||   ||||| |||| ||||||| | ||| |  |||||| ||| |||||||||||    
T  7254867 catgcaaatttttgtcattgtgctgaggatctttctcatgttgttttaaatatatagatctctatataacaacatgatgaagatcctcaacatgctg 7254963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 31326164 - 31326215
Alignment:
Q  61 gcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    ||||||||||||||||||||||||| ||  |||||| ||||||| |||||||    
T  31326164 gcaaatagatagctctctatttgactgcttgatgaaaatcttcagcatgctg 31326215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 33849435 - 33849340
Alignment:
Q  16 catgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgct 111  Q
    |||||||||||||||||||  ||||||||||||||||| || ||   ||||| |||| ||||||| | ||| |  |||||| ||| ||||||||||    
T  33849435 catgcaaatttttgtcattgtgctgaggatctttctcatgttgttttaaatatatagatctctatataacaacatgatgaagatcctcaacatgct 33849340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 38256943 - 38256982
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  38256943 accatgcaaatttttgtcattgtgctgaggatctttctca 38256982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 38264518 - 38264557
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  38264518 accatgcaaatttttgtcattgtgctgaggatctttctca 38264557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 24686869 - 24686936
Alignment:
Q  43 gatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    ||||||||||||| |||||||||||||||   ||||||||||  ||| |||||| ||||||| |||||||    
T  24686869 gatctttctcacgcggtcgcaaatagata--actctatttgattgcgtgatgaagatcttcaccatgctg 24686936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 16392 - 16285
Alignment:
Q  1 cacaccaaggaaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaataga-----tagctctctatttgacagcgggatga 95  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||| | ||||| ||||||||||||     || ||||||||||||| ||| |||||    
T  16392 cacaccaaagaaaaccatgctaacttttgtcattaagctgaggatcttccccacgttgtcgcaaatagatgagttaactctctatttgacggcgtgatga 16293  T
Q  96 acatcttc 103  Q
    | ||||||    
T  16292 agatcttc 16285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 13037680 - 13037623
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagata 71  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  13037680 accatgcaaatttatgtcattaagctgaggatcttcctcacgttgtcgcaaatagata 13037623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 17520495 - 17520404
Alignment:
Q  21 aaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgctg 112  Q
    |||||||| |||||  ||||| ||||||||||| | ||||||||||||||||| ||||||||||| ||  |||||| ||||||| |||||||    
T  17520495 aaatttttctcattgtgctgaagatctttctcatgcggtcgcaaatagatagccctctatttgactgcatgatgaagatcttcagcatgctg 17520404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 25137977 - 25138055
Alignment:
Q  24 tttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatctt 102  Q
    |||||||||||  ||||||||||||||||| | ||||||||||| ||||||||||||||||| ||  |||||| |||||    
T  25137977 tttttgtcattgtgctgaggatctttctcatgcggtcgcaaatatatagctctctatttgactgcatgatgaagatctt 25138055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 20819332 - 20819232
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgacagcgggatgaacatcttcaacatgct 111  Q
    |||||||  |||||||||||| |  ||||||||||||||||| | ||||| |||||| ||||||||||||| ||  |  |||||| ||||||| ||||||    
T  20819332 aaaccatagaaatttttgtcagtgtgctgaggatctttctcatgcggtcgaaaatagttagctctctatttaactacatgatgaagatcttcagcatgct 20819233  T
Q  112 g 112  Q
    |    
T  20819232 g 20819232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 13037547 - 13037508
Alignment:
Q  14 accatgcaaatttttgtcattaagctgaggatctttctca 53  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  13037547 accatgcaaatttttgtcattgtgctgaggatctttctca 13037508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 28547593 - 28547519
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttgaca 86  Q
    |||||||| ||| ||||||||||  ||||||||| | ||| | |  |||||||||||||| ||||||||||||||    
T  28547593 aaaccatggaaaattttgtcattgtgctgaggatatatctaatgctgtcgcaaatagatatctctctatttgaca 28547519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 19624684 - 19624615
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatt 81  Q
    |||||||| || ||||||||| |  | ||| ||||||||||| |  ||||||||||||||||||||||||    
T  19624684 aaaccatgaaattttttgtcaatgtgatgatgatctttctcatgctgtcgcaaatagatagctctctatt 19624615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 12304602 - 12304673
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttga 84  Q
    |||||||| || |||||||||||  ||||  ||||||||||| | | |||||||||||| |||||||||||||    
T  12304602 aaaccatgaaattttttgtcattgtgctggagatctttctcatgcg-tcgcaaatagattgctctctatttga 12304673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 16672 - 16743
Alignment:
Q  11 aaaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctattt 82  Q
    ||||||||| |||||||||| |||| || |||||||||||||| | |||| ||||| |||||||||||||||    
T  16672 aaaaccatggaaatttttgtaattatgcagaggatctttctcatgcggtcacaaattgatagctctctattt 16743  T

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Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 426639 - 426711
Alignment:
Q  12 aaaccatgcaaatttttgtcattaagctgaggatctttctcacgtggtcgcaaatagatagctctctatttga 84  Q
    |||||| | ||| ||||||||||  ||||| ||||||||||| || |||||||||||||| ||||||||||||    
T  426639 aaaccaggaaaacttttgtcattgtgctgaagatctttctcatgttgtcgcaaatagataactctctatttga 426711  T

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