View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_low_48 (Length: 236)

Name: NF20107_low_48
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_low_48
NF20107_low_48
[»] chr6 (45 HSPs)
chr6 (1-220)||(24886520-24886739)
chr6 (52-182)||(24890300-24890430)
chr6 (52-171)||(29887123-29887242)
chr6 (46-168)||(29905468-29905590)
chr6 (46-168)||(30118789-30118911)
chr6 (52-182)||(30999992-31000122)
chr6 (52-168)||(29835044-29835160)
chr6 (52-168)||(29866478-29866594)
chr6 (46-168)||(28926595-28926717)
chr6 (52-182)||(24730670-24730800)
chr6 (52-182)||(29348652-29348782)
chr6 (46-168)||(29897906-29898028)
chr6 (52-173)||(29946261-29946382)
chr6 (52-177)||(30127109-30127234)
chr6 (52-171)||(30060216-30060335)
chr6 (52-180)||(29876642-29876770)
chr6 (52-183)||(29366475-29366606)
chr6 (52-168)||(29099172-29099288)
chr6 (52-168)||(29116090-29116206)
chr6 (50-177)||(25450938-25451065)
chr6 (46-182)||(29882250-29882386)
chr6 (46-182)||(29909406-29909542)
chr6 (5-42)||(29905642-29905679)
chr6 (5-42)||(30118700-30118737)
chr6 (2-54)||(29946428-29946480)
chr6 (3-42)||(28926504-28926543)
chr6 (3-42)||(29887300-29887339)
chr6 (60-158)||(29889569-29889667)
chr6 (93-183)||(30154314-30154404)
chr6 (93-182)||(21160720-21160809)
chr6 (46-171)||(29929099-29929224)
chr6 (1-42)||(30061950-30061991)
chr6 (1-42)||(30127010-30127051)
chr6 (60-168)||(29073592-29073700)
chr6 (60-168)||(29078356-29078464)
chr6 (60-168)||(29084847-29084955)
chr6 (60-168)||(29106165-29106273)
chr6 (116-168)||(29358097-29358149)
chr6 (3-42)||(24890203-24890242)
chr6 (95-184)||(15715083-15715172)
chr6 (1-42)||(24730858-24730899)
chr6 (1-42)||(29876828-29876869)
chr6 (1-38)||(30060117-30060154)
chr6 (119-183)||(30053241-30053305)
chr6 (52-112)||(30062049-30062109)
[»] scaffold0573 (2 HSPs)
scaffold0573 (46-168)||(3966-4088)
scaffold0573 (3-42)||(4140-4179)
[»] chr2 (2 HSPs)
chr2 (50-171)||(15062928-15063049)
chr2 (1-54)||(15062831-15062884)
[»] chr3 (3 HSPs)
chr3 (52-177)||(24219289-24219414)
chr3 (60-170)||(33997767-33997877)
chr3 (1-42)||(24219190-24219231)
[»] scaffold0237 (1 HSPs)
scaffold0237 (46-182)||(22158-22294)
[»] scaffold0054 (2 HSPs)
scaffold0054 (52-182)||(53650-53780)
scaffold0054 (1-42)||(53551-53592)
[»] scaffold0014 (1 HSPs)
scaffold0014 (91-184)||(121564-121657)
[»] chr1 (4 HSPs)
chr1 (93-176)||(19490071-19490154)
chr1 (96-177)||(4260415-4260496)
chr1 (96-177)||(4264037-4264118)
chr1 (119-179)||(10129955-10130015)
[»] chr8 (1 HSPs)
chr8 (95-184)||(13904694-13904783)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 24886520 - 24886739
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcattatatcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24886520 attgtaagtaattatatcaggtggctgacctctatcatgcattatatcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatt 24886619  T
Q  101 tcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattaggtaggaaccactccactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24886620 tcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattaggtaggaaccactccactt 24886719  T
Q  201 tggttcatagtgttgaatat 220  Q
    ||||||||||||||||||||    
T  24886720 tggttcatagtgttgaatat 24886739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 24890300 - 24890430
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||| | |||||||| ||| |||||||||    
T  24890300 aagggaactgtaagttaccacattaggaataatttttctacaacgcatttcttcaaagagatttatggcttcatccaccattttaatcttacaaaatcca 24890399  T
Q  152 ttaatcaagatagtgtagctatgaacattag 182  Q
    |||| || | |||| ||| | ||||||||||    
T  24890400 ttaaccatggtagtatagatctgaacattag 24890430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 29887242 - 29887123
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||| |||||||||||  ||||||||| ||| |||||||||    
T  29887242 aagggaattgtaagttaccacatcaggaattagttttctacaatgcatttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatcca 29887143  T
Q  152 ttaatcaagatagtgtagct 171  Q
    ||||||| |||| |||||||    
T  29887142 ttaatcatgatattgtagct 29887123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 29905590 - 29905468
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| | | |||||| ||| |||    
T  29905590 atcgataagggaattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcaacctttttaatcttacaa 29905491  T
Q  146 aatccattaatcaagatagtgta 168  Q
    || ||||||||||||||| ||||    
T  29905490 aacccattaatcaagatattgta 29905468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 30118789 - 30118911
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||||| | | |||||| ||| |||    
T  30118789 atcgataagggaattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcgacctttttaatcttacaa 30118888  T
Q  146 aatccattaatcaagatagtgta 168  Q
    || ||||||||||||||| ||||    
T  30118889 aacccattaatcaagatattgta 30118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 30999992 - 31000122
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    |||| |||||||| ||| ||||| | ||||| ||||||||||| ||||||||||| ||||||||||||||||||| | |||||||| |||||||||||||    
T  30999992 aaggaaactgtaaattaacacattacgaataatttttctacaacgcatttcttcaaagagatttatggcttcatccaccattttaatcttgcaaaatcca 31000091  T
Q  152 ttaatcaagatagtgtagctatgaacattag 182  Q
    ||||||| | |||| ||||| ||||||||||    
T  31000092 ttaatcatggtagtatagctctgaacattag 31000122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 29835160 - 29835044
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||  ||||||||| ||| ||||  |||    
T  29835160 aagggaattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagccca 29835061  T
Q  152 ttaatcaagatagtgta 168  Q
    |||||||||||| ||||    
T  29835060 ttaatcaagatactgta 29835044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 29866594 - 29866478
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||  ||||||||| ||| ||||  |||    
T  29866594 aagggaattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagccca 29866495  T
Q  152 ttaatcaagatagtgta 168  Q
    |||||||||||| ||||    
T  29866494 ttaatcaagatactgta 29866478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 28926595 - 28926717
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||| ||||  ||||||||| ||| |||    
T  28926595 atcgataagggaattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaa 28926694  T
Q  146 aatccattaatcaagatagtgta 168  Q
    || ||||||||||||||| ||||    
T  28926695 aacccattaatcaagatattgta 28926717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 24730800 - 24730670
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||  |||||||| | |||||||| ||| || ||||||    
T  24730800 aagggaattgtaagttaccacattaggaataatttttctacaacgcatttcttcaaagagatttacagcttcatccaccattttaatcttacataatcca 24730701  T
Q  152 ttaatcaagatagtgtagctatgaacattag 182  Q
    ||||||| | | || ||||| ||||||||||    
T  24730700 ttaatcatggtggtatagctctgaacattag 24730670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 29348652 - 29348782
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||| | ||| | ||||||||||||| | ||||||| ||||||||||| | | |||||| ||| ||||| ||     
T  29348652 aagggaattgtaagttaccacatcaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatcaacctttttaatcttacaaaacccg 29348751  T
Q  152 ttaatcaagatagtgtagctatgaacattag 182  Q
    ||||||| |||| ||||||| ||||||||||    
T  29348752 ttaatcatgatattgtagctctgaacattag 29348782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 29898028 - 29897906
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||| ||| ||||||||||||||||||||||    ||||||||||||||||||||| ||||||| |||||||||||  ||||||||  ||| |||    
T  29898028 atcgataagagaattgtaagttaccacatcaggaattagctttctacaatgcatttcttcaaagagattcatggcttcatcggtcattttactcttacaa 29897929  T
Q  146 aatccattaatcaagatagtgta 168  Q
    || ||||||||||||||| ||||    
T  29897928 aacccattaatcaagatattgta 29897906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 29946382 - 29946261
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||| ||||| | ||| | | ||||||||||||||| ||||||| ||||||||||| | |||||||| ||| |||||||||    
T  29946382 aagggaattgtaagttaccacattaggaaaaatttgtttgcaatgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatcca 29946283  T
Q  152 ttaatcaagatagtgtagctat 173  Q
    ||||||| |||| | |||||||    
T  29946282 ttaatcatgataatatagctat 29946261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 30127109 - 30127234
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||||| ||||||||||||||||||||| ||||| | || |||||||||||| ||||||| ||||||||| | | | |||||| ||| ||||| |||    
T  30127109 aagggaactataagttaccacatcaggaataatttttttgcattgcatttcttcaaagagattaatggcttcacccacccttttaatcttacaaaaccca 30127208  T
Q  152 ttaatcaagatagtgtagctatgaac 177  Q
    ||||||| |||| ||||||| |||||    
T  30127209 ttaatcatgatattgtagctttgaac 30127234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 30060216 - 30060335
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| |||| |||||||||||||||||| | ||| | ||||||||||||||| ||||||| ||||||||||| | | |||||| ||| ||||| |||    
T  30060216 aagggaattgtatgttaccacatcaggaataatgtttttgcaatgcatttcttcaaagagattcatggcttcatcgacctttttaatcttacaaaaccca 30060315  T
Q  152 ttaatcaagatagtgtagct 171  Q
    |||||||  ||| |||||||    
T  30060316 ttaatcattatattgtagct 30060335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 29876770 - 29876642
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||||| |||| || |  |||||||||  ||| | |||||||||||||||   ||||||| || |||||||| |||||||||||||| |||||||||    
T  29876770 aagggaactataagctatcgtatcaggaattatttctttacaatgcatttcttggaagagattcattgcttcatccatcattttaaccttacaaaatcca 29876671  T
Q  152 ttaatcaagatagtgtagctatgaacatt 180  Q
    ||||||| |||| |||||||  |||||||    
T  29876670 ttaatcatgatactgtagctccgaacatt 29876642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 29366475 - 29366606
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||| | ||  | ||||||||||||| | ||||||| ||||||||||| | | |||||| ||| ||||| ||     
T  29366475 aagggaattgtaagttaccacatcaggaataatgttattgcaatgcatttctttaaagagattcatggcttcatcgacctttttaatcttacaaaacccg 29366574  T
Q  152 ttaatcaagatagtgtagctatgaacattagg 183  Q
    | ||||| |||| ||||||| |||| ||||||    
T  29366575 tgaatcatgatactgtagctgtgaatattagg 29366606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 29099288 - 29099172
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    |||||||||||||||||| |||||||||||| | ||| | | ||||||||||| | ||||||| ||||||||||| | | |||||| ||| ||||| ||     
T  29099288 aagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcatcaaactttttaatcttacaaaacccg 29099189  T
Q  152 ttaatcaagatagtgta 168  Q
    ||||||| |||| ||||    
T  29099188 ttaatcatgatactgta 29099172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 29116206 - 29116090
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    |||||||||||||||||| |||||||||||| | ||| | | ||||||||||| | ||||||| ||||||||||| | | |||||| ||| ||||| ||     
T  29116206 aagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcatcaaactttttaatcttacaaaacccg 29116107  T
Q  152 ttaatcaagatagtgta 168  Q
    ||||||| |||| ||||    
T  29116106 ttaatcatgatactgta 29116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 25451065 - 25450938
Alignment:
Q  50 acaagggaactgtaagttaccacatcaggaa-tattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaat 148  Q
    ||||||||||||||||||||||||||||||| ||||| || |  | |||||||||||| | || ||  |||||||||| | |||||||| ||| ||||||    
T  25451065 acaagggaactgtaagttaccacatcaggaaatatttgtt-tggactgcatttcttcaaaaagtttcctggcttcatccaccattttaatcttacaaaat 25450967  T
Q  149 ccattaatcaagatagtgtagctatgaac 177  Q
      | |||||| ||||||||||||| ||||    
T  25450966 ttactaatcatgatagtgtagctaagaac 25450938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 29882386 - 29882250
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||| ||| ||||||| ||||||||||| | ||| | |   |||||||||||   | || || ||||||||||| | |||||||| ||| |||    
T  29882386 atcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaa 29882287  T
Q  146 aatccattaatcaagatagtgtagctatgaacattag 182  Q
    ||||||||||||| |||| ||||||| ||||||||||    
T  29882286 aatccattaatcatgatactgtagctctgaacattag 29882250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 29909542 - 29909406
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||| ||| ||||||| ||||||||||| | ||| | |   |||||||||||   | || || ||||||||||| | |||||||| ||| |||    
T  29909542 atcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaa 29909443  T
Q  146 aatccattaatcaagatagtgtagctatgaacattag 182  Q
    ||||||||||||| |||| ||||||| ||||||||||    
T  29909442 aatccattaatcatgatactgtagctctgaacattag 29909406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 29905679 - 29905642
Alignment:
Q  5 taagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29905679 taagtaattatatcaggtggctgacctctatcatgcat 29905642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 30118700 - 30118737
Alignment:
Q  5 taagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30118700 taagtaattatatcaggtggctgacctctatcatgcat 30118737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 29946480 - 29946428
Alignment:
Q  2 ttgtaagtaattatatcaggtggctgacctctatcatgcattatatcgacaag 54  Q
    |||||||||||||||| |||||| ||||||||||||||||||  |||||||||    
T  29946480 ttgtaagtaattatattaggtggttgacctctatcatgcatttcatcgacaag 29946428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 28926504 - 28926543
Alignment:
Q  3 tgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  28926504 tgtaagtaattatatcaggtggttgacctctatcatgcat 28926543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 29887339 - 29887300
Alignment:
Q  3 tgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  29887339 tgtaagtaattatatcaggtggttgacctctatcatgcat 29887300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 29889667 - 29889569
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatca 158  Q
    ||||||| ||||||| ||||||| | ||| | ||||||||||||| | ||||||| ||||||||||| |   |||||| ||| ||||| ||||||||||    
T  29889667 tgtaagtcaccacattaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatcgacttttttaatcttacaaaacccattaatca 29889569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 30154404 - 30154314
Alignment:
Q  93 aatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattagg 183  Q
    |||||||||||| | ||||| | |  |||||||| | |||||||||||| || ||||||||||||| || | |||||||| ||||||||||    
T  30154404 aatgcatttctttaaagagaatcacagcttcatccaccattttaaccttacataatccattaatcatgacactgtagctacgaacattagg 30154314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 21160720 - 21160809
Alignment:
Q  93 aatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattag 182  Q
    |||||||||||| | ||||||| | ||||||||| | |||||||  ||| || | ||||||||||| || ||| ||||||||||||||||    
T  21160720 aatgcatttctttaaagagattaacggcttcatccaccattttattcttacatagtccattaatcatgacagtatagctatgaacattag 21160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 171
Target Start/End: Complemental strand, 29929224 - 29929099
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||| ||| ||||||| ||||||||||| | ||| | |   |||||||||||   | || || ||||||||||| | |||||||| ||| |||    
T  29929224 atcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaa 29929125  T
Q  146 aatccattaatcaagatagtgtagct 171  Q
    ||||||||||||| |||| |||||||    
T  29929124 aatccattaatcatgatactgtagct 29929099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30061950 - 30061991
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  30061950 attgtaagtaattatattaggtggttgacctctatcatgcat 30061991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30127010 - 30127051
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  30127010 attgtaaataattatatcaggtggttgacctctatcatgcat 30127051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 29073700 - 29073592
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 159  Q
    ||||||| ||||||| ||||||| | ||| | |||||||||| || | ||||||| ||||||||||| | | |||||| ||| ||||| || |||||||     
T  29073700 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29073601  T
Q  160 gatagtgta 168  Q
    |||| ||||    
T  29073600 gatattgta 29073592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 29078464 - 29078356
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 159  Q
    ||||||| ||||||| ||||||| | ||| | |||||||||| || | ||||||| ||||||||||| | | |||||| ||| ||||| || |||||||     
T  29078464 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29078365  T
Q  160 gatagtgta 168  Q
    |||| ||||    
T  29078364 gatattgta 29078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 29084955 - 29084847
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 159  Q
    ||||||| ||||||| ||||||| | ||| | ||||||||||| | | ||||||| || |||| ||| | | |||||| ||| ||||| |||||||||||    
T  29084955 tgtaagtcaccacattaggaataatgtttttgcaatgcatttcattaaagagattcatagctttatcgacctttttaatcttacaaaacccattaatcaa 29084856  T
Q  160 gatagtgta 168  Q
    |||| ||||    
T  29084855 gatattgta 29084847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 29106273 - 29106165
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 159  Q
    ||||||| ||||||| ||||||| | ||| | |||||||||| || | ||||||| ||||||||||| | | |||||| ||| ||||| || |||||||     
T  29106273 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29106174  T
Q  160 gatagtgta 168  Q
    |||| ||||    
T  29106173 gatattgta 29106165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 29358097 - 29358149
Alignment:
Q  116 atggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgta 168  Q
    ||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||    
T  29358097 atggcttcatccatcattttaatcttacaaaacccattaatcaagatactgta 29358149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 24890203 - 24890242
Alignment:
Q  3 tgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  24890203 tgtaagtaactatattaggtggctgacctctatcatgcat 24890242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 15715083 - 15715172
Alignment:
Q  95 tgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattaggt 184  Q
    ||||||||||   ||||||| | ||||||||| | |||||||| ||| || || |||||||| | |||||||||||| ||||||| ||||    
T  15715083 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagctgtgaacatcaggt 15715172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24730899 - 24730858
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||| ||||||| |||||| |||||||||||||||||    
T  24730899 attgtaagttattatattaggtggttgacctctatcatgcat 24730858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29876869 - 29876828
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||| |||||| || ||||||||||||||    
T  29876869 attgtaagtaattatattaggtggttggcctctatcatgcat 29876828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30060117 - 30060154
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcat 38  Q
    |||||||||||||||||||||| | |||||||||||||    
T  30060117 attgtaagtaattatatcaggtagttgacctctatcat 30060154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 30053305 - 30053241
Alignment:
Q  119 gcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattagg 183  Q
    |||||||| | |||||||  ||| || ||||||||||||| || | |||||||||||||||||||    
T  30053305 gcttcatccaccattttattcttacataatccattaatcatgacaatgtagctatgaacattagg 30053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 30062049 - 30062109
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagaga 112  Q
    ||||||| |||||| ||||||||| |||||| | ||| | ||||||||||||||| |||||    
T  30062049 aagggaattgtaagctaccacatcgggaataatgtttttgcaatgcatttcttcaaagaga 30062109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 4088 - 3966
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||| ||||  ||||||||| ||| |||    
T  4088 atcgataagggaattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaa 3989  T
Q  146 aatccattaatcaagatagtgta 168  Q
    || ||||||||||||||| ||||    
T  3988 aacccattaatcaagatattgta 3966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 4179 - 4140
Alignment:
Q  3 tgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  4179 tgtaagtaattatatcaggtggttgacctctatcatgcat 4140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 15062928 - 15063049
Alignment:
Q  50 acaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatc 149  Q
    ||||||||| |||||||||||||||  |||| | ||| | ||||||||||||||||| |||| || ||||||||||||| |||||||| ||| |||||||    
T  15062928 acaagggaattgtaagttaccacatttggaaaaatttgtttacaatgcatttcttcaaagagcttcatggcttcatctaccattttaatcttacaaaatc 15063027  T
Q  150 cattaatcaagatagtgtagct 171  Q
    ||||||||| |||| |||||||    
T  15063028 cattaatcatgatactgtagct 15063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 15062831 - 15062884
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcattatatcgacaag 54  Q
    ||||||||||||||||| || ||| ||||||||||||||||||  |||||||||    
T  15062831 attgtaagtaattatattagatggttgacctctatcatgcatttcatcgacaag 15062884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 24219289 - 24219414
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| |||| || |||||||| |||| | ||| | | ||||||||||||||| |||| || ||||||||||| | |||||||| ||| |||||||||    
T  24219289 aagggaattgtacgtcaccacatcgggaaaaatttgtttgcaatgcatttcttcaaagagtttcatggcttcatccaccattttaatcttacaaaatcca 24219388  T
Q  152 ttaatcaagatagtgtagctatgaac 177  Q
     |||||| |||| |||| ||||||||    
T  24219389 ctaatcatgatactgtaactatgaac 24219414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 33997877 - 33997767
Alignment:
Q  60 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 159  Q
    |||||||||||||||||||| || | ||| | |||||||| |||| | ||||||| ||||||||||| | | ||||   |||||| ||||||||||| |     
T  33997877 tgtaagttaccacatcaggattaatctttttccaatgcatctctttaaagagattcatggcttcatccaccctttttttcttgcacaatccattaataat 33997778  T
Q  160 gatagtgtagc 170  Q
    |||| ||||||    
T  33997777 gatattgtagc 33997767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24219190 - 24219231
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  24219190 attgtaagtaattatattaggtggttgacctctatcatgcat 24219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 22294 - 22158
Alignment:
Q  46 atcgacaagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaa 145  Q
    ||||| ||||||||| ||||||| ||||||||||| | ||| | |   |||||||||||   | || || ||||||||||| | |||||||| ||| |||    
T  22294 atcgataagggaactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaa 22195  T
Q  146 aatccattaatcaagatagtgtagctatgaacattag 182  Q
    ||||||||||||| |||| ||||||| ||||||||||    
T  22194 aatccattaatcatgatattgtagctctgaacattag 22158  T

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Target: scaffold0054 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 53650 - 53780
Alignment:
Q  52 aagggaactgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatcca 151  Q
    ||||||| ||||||||||||||||||||||| | | | |   ||||||||||    |||| || ||||||| ||| | | |||||| ||| |||||||||    
T  53650 aagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctatgaagagtttcatggctttatccacctttttaatcttacaaaatcca 53749  T
Q  152 ttaatcaagatagtgtagctatgaacattag 182  Q
    ||||||| |||| ||||||||||||||||||    
T  53750 ttaatcatgatattgtagctatgaacattag 53780  T

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Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 53551 - 53592
Alignment:
Q  1 attgtaagtaattatatcaggtggctgacctctatcatgcat 42  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  53551 attgtaagtaattatattaggtggttgacctctatcatgcat 53592  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 121564 - 121657
Alignment:
Q  91 acaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattaggt 184  Q
    |||||||||||||| | ||| ||| | ||||||||| | |||||||| ||| || || |||||||| | |||||||||||| ||||||||||||    
T  121564 acaatgcatttctttaaagaaattcaaggcttcatcaaccattttaatcttacataaaccattaataatgatagtgtagctgtgaacattaggt 121657  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 19490154 - 19490071
Alignment:
Q  93 aatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaa 176  Q
    |||||||||||||| ||||| |||  |||||||| | |||||| | ||| || ||||||||||||| |||||| ||||| ||||    
T  19490154 aatgcatttcttcaaagagacttaccgcttcatccaacattttcatcttacataatccattaatcatgatagtatagctctgaa 19490071  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 4260415 - 4260496
Alignment:
Q  96 gcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaac 177  Q
    ||||||||||| |||| || ||||||||||| | |||||| |  || |||||| ||||||||| |||| |||||||| ||||    
T  4260415 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagctacgaac 4260496  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 4264037 - 4264118
Alignment:
Q  96 gcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaac 177  Q
    ||||||||||| |||| || ||||||||||| | |||||| |  || |||||| ||||||||| |||| |||||||| ||||    
T  4264037 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagctacgaac 4264118  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 10130015 - 10129955
Alignment:
Q  119 gcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacat 179  Q
    |||||||| | |||||||| ||| |||||||||||||||| |||| |||| || |||||||    
T  10130015 gcttcatccaccattttaatcttacaaaatccattaatcatgatactgtaactttgaacat 10129955  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 13904694 - 13904783
Alignment:
Q  95 tgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagctatgaacattaggt 184  Q
    ||||||||||   ||||||| | ||||||||| | |||||||| ||| || || |||||||| | |||||||||||| ||||||| ||||    
T  13904694 tgcatttctttgaagagattcaaggcttcatcaaccattttaatcttacataagccattaataatgatagtgtagctgtgaacatcaggt 13904783  T

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