View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_5 (Length: 588)
Name: NF20107_low_5
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 12551289 - 12550731
Alignment:
| Q |
19 |
ggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaataatgttggttgttcaattagtttagtgttagattttaaat |
118 |
Q |
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| T |
12551289 |
ggtgtgacgcagaatttaattatgaaacaggaaaactaaattgatttctaactctgaaataatgttggttgttcaattagtttagtgttagattttaaat |
12551190 |
T |
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| Q |
119 |
aaaagtttgtgacaacgatctaaattataacatcaagacctttgttgttttgcgatcacgatcatcaactatattatataatggttttagactagtctaa |
218 |
Q |
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| T |
12551189 |
aaaagtttgtgacaacgatctaaattataacatcaagatctttgttgttttgcgatcacgatcatcaactatattatataatggttttagactagtctaa |
12551090 |
T |
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| Q |
219 |
ggtccaatctcttgcgaactcacaagtcacaaccctcttttaaagcacacttgacccaaagaccaatccacctggcataagattcttgaaatttgtaacg |
318 |
Q |
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| T |
12551089 |
ggtccaatctcttgcgaactcacaagtcacaaccctcttttaaagcacacttgacccaaagaccaatccacctggcataagattcttgaaatttgtaacg |
12550990 |
T |
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| Q |
319 |
cctcaacgagttcaatgaccttgaacggctgcaagagcacaccattaatgaagggtgtcatatgtaacgttcctccctttacgcatcaacagctcctttc |
418 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550989 |
cctcaacgagttcaatgccctcgaacggctgcaagagcacaccattaatgaagggtgtcatatgtaacgttcctccctttacgcatcaacagctcctttc |
12550890 |
T |
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| Q |
419 |
taggattgtataaataatccttctcacaacaatgcaaggtacacaatttctcaactcgtaaacctcacactctttggtcacttactatcttagacgtcag |
518 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12550889 |
taggattgtataaatactctttctcacaacaatgcaaggtacacaatttctcaactcgtaaacctcacactctttggtcacttactatcttatacgtcag |
12550790 |
T |
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| Q |
519 |
agtgctccaatccagataactttctcgatctatccagatcaataatgactttctttcat |
577 |
Q |
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| T |
12550789 |
agtgctccaatccagataactttctcggtctatccagatcaataatgactttctttcat |
12550731 |
T |
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