View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20107_low_51 (Length: 217)

Name: NF20107_low_51
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20107_low_51
NF20107_low_51
[»] chr2 (44 HSPs)
chr2 (20-205)||(7431938-7432123)
chr2 (44-199)||(26784413-26784563)
chr2 (20-158)||(33504323-33504457)
chr2 (48-199)||(44437798-44437944)
chr2 (62-197)||(38435013-38435143)
chr2 (26-199)||(37470188-37470356)
chr2 (38-99)||(1626349-1626410)
chr2 (20-112)||(37481666-37481758)
chr2 (50-199)||(12026084-12026228)
chr2 (46-197)||(19235059-19235205)
chr2 (62-197)||(42543296-42543426)
chr2 (62-199)||(42092576-42092708)
chr2 (57-197)||(43832159-43832294)
chr2 (62-121)||(5759086-5759145)
chr2 (29-195)||(12141607-12141768)
chr2 (62-116)||(12489893-12489947)
chr2 (50-96)||(31254445-31254491)
chr2 (38-116)||(33287558-33287636)
chr2 (38-99)||(8197608-8197669)
chr2 (38-99)||(8202368-8202429)
chr2 (62-118)||(4598653-4598709)
chr2 (20-116)||(9556418-9556514)
chr2 (20-116)||(26670905-26671001)
chr2 (133-193)||(43260469-43260529)
chr2 (38-113)||(18188892-18188967)
chr2 (20-99)||(42149709-42149788)
chr2 (29-199)||(18958970-18959135)
chr2 (20-82)||(32402671-32402733)
chr2 (38-175)||(36869941-36870073)
chr2 (39-99)||(41779178-41779238)
chr2 (52-99)||(19024332-19024379)
chr2 (29-116)||(19855599-19855686)
chr2 (48-99)||(28960288-28960339)
chr2 (52-99)||(31386910-31386957)
chr2 (136-199)||(45077814-45077877)
chr2 (44-114)||(6230337-6230407)
chr2 (20-98)||(19336942-19337020)
chr2 (59-96)||(13240851-13240888)
chr2 (166-199)||(13240935-13240968)
chr2 (129-199)||(14197311-14197385)
chr2 (62-99)||(38860332-38860369)
chr2 (62-99)||(45640616-45640653)
chr2 (62-98)||(33625289-33625325)
chr2 (59-99)||(44415784-44415824)
[»] chr5 (37 HSPs)
chr5 (21-176)||(12576910-12577060)
chr5 (62-199)||(42199345-42199477)
chr5 (48-199)||(14749366-14749512)
chr5 (62-199)||(21952416-21952546)
chr5 (70-199)||(6859440-6859564)
chr5 (48-199)||(7359337-7359483)
chr5 (46-124)||(42199522-42199600)
chr5 (62-199)||(2713003-2713135)
chr5 (20-199)||(14667830-14668004)
chr5 (29-199)||(6889052-6889217)
chr5 (44-158)||(18698894-18699003)
chr5 (40-199)||(7678542-7678691)
chr5 (38-196)||(30588511-30588662)
chr5 (62-116)||(10082836-10082890)
chr5 (62-116)||(33667572-33667626)
chr5 (47-116)||(38684617-38684686)
chr5 (62-114)||(31636011-31636063)
chr5 (62-120)||(28186866-28186925)
chr5 (29-153)||(9235153-9235271)
chr5 (62-116)||(9917541-9917595)
chr5 (61-199)||(15489582-15489715)
chr5 (63-116)||(27998578-27998631)
chr5 (62-199)||(43475299-43475430)
chr5 (63-99)||(1174643-1174679)
chr5 (63-119)||(17213208-17213264)
chr5 (48-111)||(13625254-13625317)
chr5 (62-116)||(1525781-1525835)
chr5 (59-116)||(1275401-1275458)
chr5 (62-99)||(1935276-1935313)
chr5 (55-116)||(2066134-2066195)
chr5 (63-92)||(8492425-8492454)
chr5 (48-97)||(20367049-20367098)
chr5 (63-96)||(28005692-28005725)
chr5 (69-114)||(29922423-29922468)
chr5 (51-96)||(39322146-39322191)
chr5 (52-124)||(4460337-4460408)
chr5 (131-199)||(21093811-21093879)
[»] chr4 (51 HSPs)
chr4 (62-176)||(47147455-47147564)
chr4 (36-199)||(8459100-8459258)
chr4 (44-199)||(54470266-54470416)
chr4 (62-199)||(31961357-31961489)
chr4 (62-116)||(10209173-10209227)
chr4 (29-199)||(42639078-42639243)
chr4 (62-199)||(28351618-28351750)
chr4 (62-199)||(31897519-31897651)
chr4 (38-187)||(34233091-34233235)
chr4 (39-175)||(7681978-7682109)
chr4 (131-197)||(21879308-21879374)
chr4 (62-114)||(934522-934574)
chr4 (44-116)||(20999137-20999209)
chr4 (20-99)||(37042713-37042792)
chr4 (29-99)||(6843769-6843839)
chr4 (62-116)||(26356756-26356810)
chr4 (62-116)||(46372161-46372215)
chr4 (27-91)||(44047426-44047491)
chr4 (20-109)||(47372795-47372884)
chr4 (48-116)||(2589209-2589277)
chr4 (21-109)||(26024900-26024988)
chr4 (26-114)||(31403089-31403177)
chr4 (48-116)||(37488228-37488296)
chr4 (38-110)||(42293332-42293404)
chr4 (20-95)||(25574982-25575057)
chr4 (62-109)||(26025010-26025057)
chr4 (48-99)||(33710078-33710129)
chr4 (29-199)||(13805323-13805488)
chr4 (62-116)||(49738641-49738695)
chr4 (62-116)||(50680877-50680931)
chr4 (29-147)||(53540401-53540514)
chr4 (131-188)||(11389794-11389851)
chr4 (62-99)||(29182606-29182643)
chr4 (44-93)||(41192221-41192270)
chr4 (38-114)||(2557739-2557815)
chr4 (63-99)||(7544615-7544651)
chr4 (128-199)||(31339595-31339665)
chr4 (20-95)||(44384988-44385063)
chr4 (36-109)||(21879218-21879292)
chr4 (38-116)||(45204906-45204984)
chr4 (20-90)||(55028984-55029054)
chr4 (48-97)||(5306452-5306501)
chr4 (63-116)||(8599033-8599086)
chr4 (29-98)||(22420775-22420843)
chr4 (63-116)||(33225925-33225978)
chr4 (20-116)||(44719410-44719509)
chr4 (20-112)||(20105567-20105659)
chr4 (20-116)||(23906346-23906442)
chr4 (151-199)||(28497548-28497596)
chr4 (20-116)||(31959863-31959959)
chr4 (62-98)||(42285794-42285830)
[»] chr3 (37 HSPs)
chr3 (46-199)||(21200607-21200755)
chr3 (62-122)||(36820068-36820128)
chr3 (128-199)||(36304037-36304108)
chr3 (62-116)||(26990350-26990404)
chr3 (20-116)||(55244414-55244511)
chr3 (64-124)||(2340810-2340870)
chr3 (62-187)||(46431770-46431886)
chr3 (39-96)||(36304123-36304180)
chr3 (31-116)||(43308699-43308784)
chr3 (60-116)||(11581581-11581637)
chr3 (48-116)||(37351544-37351612)
chr3 (20-116)||(39600730-39600826)
chr3 (56-116)||(41087881-41087941)
chr3 (50-113)||(41452819-41452882)
chr3 (20-199)||(42026585-42026759)
chr3 (29-124)||(47804721-47804816)
chr3 (62-116)||(27893226-27893280)
chr3 (29-99)||(49841770-49841840)
chr3 (62-115)||(44443295-44443348)
chr3 (151-199)||(3870619-3870667)
chr3 (62-98)||(29475841-29475877)
chr3 (20-116)||(50960686-50960782)
chr3 (38-109)||(45289158-45289229)
chr3 (29-116)||(45493750-45493837)
chr3 (133-199)||(29374993-29375059)
chr3 (60-110)||(33307257-33307307)
chr3 (62-124)||(33755433-33755495)
chr3 (62-116)||(40116559-40116613)
chr3 (62-116)||(40982033-40982087)
chr3 (66-116)||(43255028-43255078)
chr3 (48-197)||(42510093-42510237)
chr3 (62-114)||(2198977-2199029)
chr3 (67-119)||(7278593-7278645)
chr3 (44-109)||(11284136-11284197)
chr3 (143-199)||(33307187-33307243)
chr3 (20-116)||(37598219-37598314)
chr3 (131-199)||(50249446-50249514)
[»] chr1 (56 HSPs)
chr1 (20-199)||(38868941-38869115)
chr1 (44-201)||(33560931-33561083)
chr1 (48-195)||(3818933-3819075)
chr1 (20-173)||(6025690-6025838)
chr1 (48-199)||(43423778-43423924)
chr1 (38-124)||(42501237-42501323)
chr1 (46-199)||(30834052-30834200)
chr1 (26-199)||(40416430-40416598)
chr1 (20-199)||(32404575-32404749)
chr1 (48-116)||(29807993-29808061)
chr1 (128-199)||(5338783-5338854)
chr1 (29-176)||(8796291-8796433)
chr1 (62-116)||(8203225-8203279)
chr1 (46-116)||(8342956-8343026)
chr1 (62-116)||(19969303-19969357)
chr1 (62-116)||(28528492-28528546)
chr1 (38-197)||(990525-990680)
chr1 (20-173)||(17815564-17815712)
chr1 (48-199)||(43898290-43898437)
chr1 (62-158)||(853876-853967)
chr1 (20-116)||(7762486-7762582)
chr1 (20-152)||(28511850-28511977)
chr1 (128-199)||(10569219-10569290)
chr1 (62-116)||(7083027-7083081)
chr1 (20-110)||(7124284-7124374)
chr1 (49-119)||(39515946-39516016)
chr1 (20-82)||(40920578-40920640)
chr1 (51-113)||(43367710-43367772)
chr1 (38-96)||(50636238-50636296)
chr1 (62-116)||(50771647-50771701)
chr1 (62-99)||(15577572-15577609)
chr1 (51-96)||(17640147-17640192)
chr1 (63-116)||(26016574-26016627)
chr1 (62-115)||(46388514-46388567)
chr1 (62-115)||(46394958-46395011)
chr1 (48-116)||(50806806-50806872)
chr1 (38-98)||(10569138-10569198)
chr1 (48-96)||(29577219-29577267)
chr1 (62-101)||(12135859-12135898)
chr1 (62-113)||(12231505-12231556)
chr1 (128-199)||(13827722-13827793)
chr1 (62-113)||(30445251-30445302)
chr1 (65-116)||(51584881-51584932)
chr1 (38-80)||(13827647-13827689)
chr1 (62-124)||(26299214-26299276)
chr1 (62-116)||(27637722-27637776)
chr1 (26-116)||(29128920-29129010)
chr1 (44-82)||(48861450-48861488)
chr1 (62-119)||(8676956-8677013)
chr1 (62-99)||(30396820-30396857)
chr1 (166-199)||(46388435-46388468)
chr1 (166-199)||(46394879-46394912)
chr1 (68-116)||(10272395-10272443)
chr1 (38-78)||(25460186-25460226)
chr1 (62-98)||(40419794-40419830)
chr1 (56-116)||(52442613-52442673)
[»] chr8 (38 HSPs)
chr8 (61-116)||(16351515-16351570)
chr8 (19-124)||(24399837-24399942)
chr8 (20-199)||(29520709-29520882)
chr8 (38-116)||(35643673-35643751)
chr8 (62-199)||(32043649-32043781)
chr8 (38-199)||(38391960-38392116)
chr8 (56-116)||(4011220-4011280)
chr8 (44-195)||(38178333-38178479)
chr8 (53-116)||(43733344-43733407)
chr8 (62-116)||(7531735-7531789)
chr8 (38-116)||(16917320-16917398)
chr8 (20-113)||(79167-79260)
chr8 (50-199)||(5908705-5908849)
chr8 (27-124)||(10108942-10109039)
chr8 (62-199)||(16971845-16971977)
chr8 (62-115)||(39967590-39967643)
chr8 (21-109)||(23492178-23492266)
chr8 (128-199)||(16715332-16715403)
chr8 (62-125)||(16994535-16994598)
chr8 (40-159)||(30783111-30783225)
chr8 (62-185)||(32931034-32931152)
chr8 (50-116)||(10079986-10080052)
chr8 (62-116)||(23023362-23023416)
chr8 (46-124)||(27037764-27037842)
chr8 (52-116)||(39388919-39388984)
chr8 (20-116)||(11733884-11733980)
chr8 (20-116)||(35362699-35362795)
chr8 (38-175)||(37826374-37826502)
chr8 (50-113)||(13589619-13589682)
chr8 (44-99)||(16705901-16705956)
chr8 (29-116)||(17491712-17491799)
chr8 (128-171)||(39051229-39051272)
chr8 (62-116)||(30812907-30812961)
chr8 (38-91)||(12966381-12966434)
chr8 (63-116)||(39953356-39953409)
chr8 (48-116)||(28169529-28169597)
chr8 (131-183)||(29700351-29700403)
chr8 (50-94)||(38483048-38483092)
[»] chr7 (40 HSPs)
chr7 (62-199)||(30144834-30144966)
chr7 (38-115)||(1569154-1569231)
chr7 (20-116)||(45601613-45601709)
chr7 (62-199)||(5335979-5336109)
chr7 (34-116)||(12966153-12966235)
chr7 (62-116)||(40830339-40830393)
chr7 (46-99)||(24549763-24549816)
chr7 (20-197)||(28627982-28628154)
chr7 (44-113)||(42177091-42177160)
chr7 (44-112)||(29653619-29653687)
chr7 (128-199)||(6420642-6420713)
chr7 (29-124)||(22174129-22174224)
chr7 (38-113)||(28858185-28858260)
chr7 (128-198)||(47848734-47848804)
chr7 (51-116)||(18605226-18605291)
chr7 (71-148)||(30814771-30814843)
chr7 (62-195)||(38135304-38135431)
chr7 (62-158)||(41461196-41461290)
chr7 (38-90)||(30200031-30200083)
chr7 (62-98)||(30664723-30664759)
chr7 (48-116)||(34745884-34745952)
chr7 (48-116)||(43281968-43282036)
chr7 (128-199)||(19262586-19262656)
chr7 (29-116)||(37976372-37976459)
chr7 (38-199)||(43282467-43282624)
chr7 (63-109)||(19119516-19119562)
chr7 (29-99)||(19262516-19262586)
chr7 (38-120)||(33103059-33103141)
chr7 (71-116)||(14593897-14593942)
chr7 (71-116)||(16013420-16013465)
chr7 (51-116)||(18637699-18637764)
chr7 (51-116)||(18651133-18651198)
chr7 (62-99)||(30914593-30914630)
chr7 (128-193)||(34341531-34341596)
chr7 (50-99)||(35922407-35922456)
chr7 (50-99)||(40139027-40139076)
chr7 (63-116)||(44401217-44401270)
chr7 (166-199)||(48202892-48202925)
chr7 (23-99)||(41483641-41483717)
chr7 (38-90)||(47604029-47604081)
[»] chr6 (22 HSPs)
chr6 (62-119)||(10617325-10617382)
chr6 (63-199)||(21870158-21870288)
chr6 (48-199)||(579477-579623)
chr6 (20-116)||(34554-34650)
chr6 (44-116)||(1747714-1747786)
chr6 (62-116)||(38900-38954)
chr6 (62-124)||(31831950-31832012)
chr6 (62-99)||(1681612-1681649)
chr6 (38-109)||(1748012-1748083)
chr6 (136-199)||(2079399-2079462)
chr6 (20-159)||(33997593-33997727)
chr6 (131-199)||(32913417-32913485)
chr6 (132-199)||(14389324-14389391)
chr6 (48-99)||(26291931-26291982)
chr6 (38-198)||(31818591-31818746)
chr6 (21-99)||(43102-43180)
chr6 (29-98)||(6293450-6293519)
chr6 (29-98)||(35199681-35199749)
chr6 (20-116)||(5095971-5096067)
chr6 (131-199)||(6906982-6907050)
chr6 (28-116)||(9593765-9593853)
chr6 (20-116)||(28085513-28085609)
[»] scaffold0325 (1 HSPs)
scaffold0325 (64-114)||(11936-11986)
[»] scaffold0373 (1 HSPs)
scaffold0373 (29-99)||(2359-2429)
[»] scaffold0018 (2 HSPs)
scaffold0018 (62-116)||(178511-178565)
scaffold0018 (131-199)||(44023-44091)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-199)||(346870-346996)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 7431938 - 7432123
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7431938 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 7432037  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctctctgctc 205  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7432038 cctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaggaatctacaagtcttctctctctgctc 7432123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 26784413 - 26784563
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatct 143  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||| |||||     |||||||||||||| |    
T  26784413 atataccatatttctattcaactcattaatctctatatctttcttaatagtttctcttatagtttttctaggtctttct-----ctgcctctagtgattt 26784507  T
Q  144 gactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||| |||||||| || ||  |||||||||| | |||| |||  ||||||||||    
T  26784508 gactaccctccatcttatctaccctccttactacaaaatccacatatcttctctct 26784563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 33504457 - 33504323
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaa-tctctagatccttcttaatagtttctccaatagtttttctaggttt 118  Q
    ||||| || |||| ||| ||||| |||||||||||||  || ||||| ||||| |||||||||| ||||||||||||||||  |||||||||||||||||    
T  33504457 caaattacgccataatgttctatcatataccatatttcaatccaacttattaaatctctagatctttcttaatagtttctcttatagtttttctaggttt 33504358  T
Q  119 ttctcttgcctgcctctagtgatctgactactctccatct 158  Q
    ||||     |||||||||||||||||||||| ||||||||    
T  33504357 ttct-----ctgcctctagtgatctgactaccctccatct 33504323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 44437798 - 44437944
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |  |     ||| |||||||||||||||||    
T  44437798 accatgtttttctccaactcatttatctctagatccttcttaatagtttctcatatagtttttctaggtctacc-----cctacctctagtgatctgact 44437892  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     | |||||||| || ||| ||||||| || |||||| |||||||||||||||    
T  44437893 cccctccatctcatctatactccttattacagaatccacaagtcttctctct 44437944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 38435143 - 38435013
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||| |||||||||||||||| ||||||||||||||||   |||||||||||||| |  ||||     |||||||||||||||||||  |||||| | ||    
T  38435143 caacacattaatctctagatctttcttaatagtttctcttgtagtttttctaggtctacctct-----gcctctagtgatctgactatcctccatatgat 38435049  T
Q  162 ttattctccttactaaagaatctacaagtcttctct 197  Q
     || |||||||||||||| |||||||||||||||||    
T  38435048 ctactctccttactaaagcatctacaagtcttctct 38435013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 37470188 - 37470356
Alignment:
Q  26 acaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctctt 125  Q
    ||||||| ||| ||||| |||| ||||||||  || |||||||||||||||||||||  || ||||||||||||  |||||||||  |||| || ||||     
T  37470188 acaccataatgttctatcatatgccatatttcgatccaactcattaatctctagatctgtcctaatagtttctcttatagttttttcaggtcttcctcta 37470287  T
Q  126 gcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
         || ||||||||||||||||  |||||||||| || |||||||| || | ||||||||||||||||||||    
T  37470288 -----ccactagtgatctgactaccttccatctaatctactctccttaatacataatctacaagtcttctctct 37470356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 1626410 - 1626349
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  1626410 tctattatatatcatatttttatacaactcattaatctctagatctttcttaatagtttctc 1626349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 37481666 - 37481758
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttct 112  Q
    |||| |||||||| ||  ||||| | ||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| ||||||||||||    
T  37481666 caaaagacaccataattttctatcaaataccatatttttatccaactcatttatcgctagatctttcttaatagtttctctaatagtttttct 37481758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 12026084 - 12026228
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactac 149  Q
    ||||||| |||  |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||  |     | ||||| |||||| |||||||    
T  12026084 catatttctatcaaactcattaatctctagatctttcttaatagtttctcctatagtttctctaggtcttaat-----ccgcctccagtgatgtgactac 12026178  T
Q  150 tctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     | |||||| || || |||||||| || | |||||||| |||||||||||    
T  12026179 ccaccatctgatctactctccttagtacaaaatctacaggtcttctctct 12026228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 19235059 - 19235205
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctga 145  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||| |||||||||||  ||||||||||||||| || ||     ||  |||||||||| |||    
T  19235059 ataccatatttctatccaaatcattaatctctagatctttctcaatagtttctcttatagtttttctaggtcttcct-----ctatctctagtgatttga 19235153  T
Q  146 ctactctccatctaatttattctccttactaaagaatctacaagtcttctct 197  Q
    || | |||||||| || || |||| |||||| ||||||  || |||||||||    
T  19235154 ctcccctccatctgatctactctctttactacagaatccgcaggtcttctct 19235205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 197
Target Start/End: Complemental strand, 42543426 - 42543296
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |  |     ||| ||||||||||||||||| | |||||| | ||    
T  42543426 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacc-----cctacctctagtgatctgactcccctccatttgat 42543332  T
Q  162 ttattctccttactaaagaatctacaagtcttctct 197  Q
     || |||||| |||| |||||| ||| |||||||||    
T  42543331 ctactctcctaactacagaatccacaggtcttctct 42543296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 42092708 - 42092576
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||| ||||||||||| ||| || |||||||||||||| ||||||||||||||| |    | || ||  || ||||||  ||||||| |||||||||||    
T  42092708 caactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtct---acctgtct--ctatagtgaattgactaccctccatctaat 42092614  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||||||||||| | |||||||||| |||||||||    
T  42092613 ctactctccttactacaaaatctacaagccttctctct 42092576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 43832294 - 43832159
Alignment:
Q  57 ttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccat 156  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||| | ||||| || ||     |||| |||| |||| ||| ||||||||||    
T  43832294 ttatccaactcattaatctctagatccttcttaatagtttctcttatagtttgtttaggtcttcct-----ctgcgtctactgatttgattactctccat 43832200  T
Q  157 ctaatttattctccttactaaagaatctacaagtcttctct 197  Q
    || || || |||||| |||| | |||| ||| || ||||||    
T  43832199 ctgatctactctcctaactacataatccacatgttttctct 43832159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 5759086 - 5759145
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttc 121  Q
    ||||||||| |||||||||||||||||  ||||||||| |||||||||||||||| ||||    
T  5759086 caactcattgatctctagatccttcttggtagtttctctaatagtttttctaggtatttc 5759145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 12141768 - 12141607
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| |||||||||||||  || ||| |||||||||||||  || ||| ||||||||||||| |||| |||||||||| || ||     |    
T  12141768 ccataatgttctatcatataccatatttggatccaagtcattaatctctaagtctttcctaatagtttctcctatagcttttctaggtcttcct-----c 12141674  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttct 195  Q
    | ||||| || || ||||||  ||| |||| || || ||||||||||| |||||||||| |||||||    
T  12141673 tacctcttgtaatttgactatcctcaatctgatctactctccttactagagaatctacaggtcttct 12141607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 12489893 - 12489947
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||    
T  12489893 caactcatttatctctagatccttcctaatagtttctcatatagtttttctaggt 12489947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 31254491 - 31254445
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||    
T  31254491 catatttctattcaactcattaatctctagatctttcttaatagttt 31254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 33287636 - 33287558
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||| |||||||||  ||  ||||||||||| |||||||| ||||||||||||||||  |||||||||||||||    
T  33287636 tctatcataaaccatatttcgatctaactcattaatttctagatctttcttaatagtttctcttatagtttttctaggt 33287558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 8197608 - 8197669
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||| ||||| ||||||| ||| |||||||||||||| |||||| ||||||||||||||||    
T  8197608 tctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagtttctc 8197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 8202368 - 8202429
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||| ||||| ||||||| ||| |||||||||||||| |||||| ||||||||||||||||    
T  8202368 tctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagtttctc 8202429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 4598653 - 4598709
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggttt 118  Q
    ||||||||| ||||||||||||||| |||||| |||||  |||||||||||||||||    
T  4598653 caactcatttatctctagatccttcctaatagcttctcgtatagtttttctaggttt 4598709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 9556418 - 9556514
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||| | ||| ||||| ||| ||||||| || || ||||||||||||| ||||||| ||||||||||||| ||  |||||||||| ||||    
T  9556418 caaattacaccctaatgttctatcataaaccatatcttgatccaactcattaatcactagatctttcttaatagtttatcttatagtttttcaaggt 9556514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 26671001 - 26670905
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||||||  ||||| ||| | ||||||||  | ||||||||||||||||| ||| |||||||||||||||   ||||||||| |||||    
T  26671001 caaattacaccattatattctatcataaatcatattttggtccaactcattaatctctaaatctttcttaatagtttcttttatagtttttgtaggt 26670905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 43260529 - 43260469
Alignment:
Q  133 tctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtctt 193  Q
    ||||||||| ||||||| |||||||| || || ||||||||||| ||||||||||||||||    
T  43260529 tctagtgatttgactaccctccatctgatctactctccttactatagaatctacaagtctt 43260469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 18188967 - 18188892
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    |||||||| || ||||||| ||| || |||||||||||||||||| |||| |||||||||||  ||| ||||||||    
T  18188967 tctattatgtatcatatttctatccagctcattaatctctagatctttctgaatagtttctcttataatttttcta 18188892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 42149709 - 42149788
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||| || |||| ||| ||||| ||| ||||||||| ||| || |||| ||||||||||||| ||||||||||||||||    
T  42149709 caaattacgccataatgttctatcataaaccatatttctatccagctcaataatctctagatctttcttaatagtttctc 42149788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 18959135 - 18958970
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| |||||||||| || ||||||||||||||| |  || ||| | ||||||||||   |||||||||||||| || ||     |    
T  18959135 ccataatgttctatcatagaccatattttgatccaactcattaatctccaagtctttccttatagtttctcttgtagtttttctaggtcttcct-----c 18959041  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||  |||||||||||  |||||||| || || ||||||||||| | || || || |||||||||||    
T  18959040 tgcctctgatgatctgactatcctccatctgatctactctccttactacaaaagctgcaggtcttctctct 18958970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 32402733 - 32402671
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatc 82  Q
    ||||||| ||||| ||| ||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  32402733 caaatgaaaccataatgttctatcatataccttatttctatccaactcattaatctctagatc 32402671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 36870073 - 36869941
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||||||||||||  ||| || ||||  |||||||| |||||||||| |||||||||  ||||||||||||| | || ||      |||||||||    
T  36870073 tctatcatataccatattcatatgcatctcagaaatctctaaatccttcttattagtttctcttatagtttttctagctcttcct-----atgcctctag 36869979  T
Q  138 tgatctgactactctccatctaatttattctccttact 175  Q
    |||  || |||  |||||||||||||| ||||||||||    
T  36869978 tgaattgtctatcctccatctaatttactctccttact 36869941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 41779178 - 41779238
Alignment:
Q  39 ctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||||| ||||| | ||||||||||||||||||||||||| || |||||| ||||||    
T  41779178 ctatcatatatcatatctctattcaactcattaatctctagatcttttttaataatttctc 41779238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 19024379 - 19024332
Alignment:
Q  52 tatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||| ||| |||||||||||||| |||||| ||||||||||||||||    
T  19024379 tatttatatccaactcattaatctttagatctttcttaatagtttctc 19024332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 19855686 - 19855599
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||| ||||| ||||||||| ||| ||| || |||||||| |||| |||| |||||||||||||||   ||||||| |||||||    
T  19855686 ccataatgctctatcatataccatgtttctatccagctcattaacctctggatctttcttaatagtttcttttatagtttatctaggt 19855599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 28960288 - 28960339
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||| ||| | ||||||||| ||||||||||||||||||| ||||||||    
T  28960288 accatatctttctccaactcatttatctctagatccttcttaacagtttctc 28960339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 31386910 - 31386957
Alignment:
Q  52 tatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||||||||    
T  31386910 tatttttatccaactcattaatctctagatcattcatgatagtttctc 31386957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 45077877 - 45077814
Alignment:
Q  136 agtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||  |||||||| || || ||||||||||| | ||||||||||| ||||||||    
T  45077877 agtgatctgactatcctccatctgatctactctccttactacaaaatctacaagttttctctct 45077814  T

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Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 6230337 - 6230407
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||||||||||  |||  || ||| ||||||||||||  |||||||||||||||| |||| |||||||||    
T  6230337 atataccatattcatatcaaattcaataatctctagatttttcttaatagtttctctaatattttttctag 6230407  T

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Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 19336942 - 19337020
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttct 98  Q
    ||||| || |||| ||| ||||| ||| |||||||||  || ||||||||||||||||| ||| ||||| |||||||||    
T  19336942 caaattacgccataatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttctttatagtttct 19337020  T

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Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 13240851 - 13240888
Alignment:
Q  59 attcaactcattaatctctagatccttcttaatagttt 96  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13240851 attcaactcgttaatctctagatctttcttaatagttt 13240888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 13240935 - 13240968
Alignment:
Q  166 tctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||||||| |||||||||||    
T  13240935 tctccttactaaagaatctacatgtcttctctct 13240968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 14197311 - 14197385
Alignment:
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaa----agaatctacaagtcttctctct 199  Q
    ||||||||||||| |||||||||||||||| |  || |||||||||||     ||||||||||||||||| ||||    
T  14197311 tgcctctagtgatttgactactctccatctgacctactctccttactagttagagaatctacaagtcttcactct 14197385  T

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Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 38860369 - 38860332
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  38860369 caactcatgaatctctagatctttcttaatagtttctc 38860332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 45640616 - 45640653
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  45640616 caacttattaatctctagatctttcttaatagtttctc 45640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 33625289 - 33625325
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttct 98  Q
    ||||||||||||||||||||  |||||||||||||||    
T  33625289 caactcattaatctctagatatttcttaatagtttct 33625325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 44415824 - 44415784
Alignment:
Q  59 attcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  44415824 attcaactcctcaatctctagatctttcttaatagtttctc 44415784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 12576910 - 12577060
Alignment:
Q  21 aaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggttttt 120  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||   |||||||||||||| ||     
T  12576910 aaatgacaccataatggtctatcatataccatatttctattcaactcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtcttc 12577009  T
Q  121 ctcttgcctgcctctagtgatctgactactctccatctaatttattctccttacta 176  Q
    ||     ||||||||||||||  |||||| |||||||| || || |||||||||||    
T  12577010 ct-----ctgcctctagtgataggactaccctccatctgatctactctccttacta 12577060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 42199477 - 42199345
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||||||||||| |||||||| |||| |||||||| || |||||||||||||||| |||||     || || |||||||| |||||||||||||| | ||    
T  42199477 caactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttct-----ctccccctagtgatttgactactctccatgtgat 42199383  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||||||||||| |||||||||| |||||||||||    
T  42199382 ctactctccttactacagaatctacatgtcttctctct 42199345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 14749512 - 14749366
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    ||||||||| ||| |||||| |||||||||||||||||||| ||||||||||  ||||||||||||||| || ||     |||||| ||||||| |||||    
T  14749512 accatatttctatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtcttcct-----ctgcctttagtgatttgact 14749418  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     | |||||||| ||  | ||||||||| | |||||| ||| |||||||||||    
T  14749417 cccctccatctgatcgactctccttacaacagaatccacaggtcttctctct 14749366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 21952546 - 21952416
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||| ||||||||||||||||||||| |||||||||||  ||||||||||||||| || |     ||| ||||||||||| ||||| | |||||||| ||    
T  21952546 caacccattaatctctagatccttctcaatagtttctc--atagtttttctaggtcttcc-----cctacctctagtgatttgactcccctccatctgat 21952454  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     |||||||||||||| |||||| ||| | |||||||||    
T  21952453 ctattctccttactatagaatccacaggacttctctct 21952416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 199
Target Start/End: Complemental strand, 6859564 - 6859440
Alignment:
Q  70 taatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaatttattctc 169  Q
    |||||| || ||| ||| ||||||||||||  ||||||||||||||| || |||||     ||||||||| | ||||||  ||||||||||||||||| |    
T  6859564 taatctgtaaatctttcctaatagtttctcttatagtttttctaggtcttcctctt-----cctctagtggtttgactatcctccatctaatttattccc 6859470  T
Q  170 cttactaaagaatctacaagtcttctctct 199  Q
    ||||||| |||||| |||||||||||||||    
T  6859469 cttactacagaatccacaagtcttctctct 6859440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 7359337 - 7359483
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    |||||||||  || ||||| ||||||||||||||  |||| |||||||||||  || ||||||||||| ||| ||     |||||||||||||| |||||    
T  7359337 accatatttcgatccaacttattaatctctagatttttctaaatagtttctcttatggtttttctaggctttcct-----ctgcctctagtgatatgact 7359431  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |  |||||||| || || ||||||||||| ||||||||||  ||||||||||    
T  7359432 atcctccatctgatctactctccttactacagaatctacatatcttctctct 7359483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 42199600 - 42199522
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||||||||| ||| |||||||||||| |||||||| |||| |||||||| || |||||||||||||||| |||||||    
T  42199600 ataccatatttctatccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtctttctct 42199522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 2713135 - 2713003
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||||| || |     |||| |||||||||| |||||   |||||||| ||    
T  2713135 caactcattcatctctagatccttcttaatagtttctcttatagtttttctaggtcttcc-----cctgactctagtgatttgactctcctccatctgat 2713041  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || |||||||  || |||||| ||| |||||||||||    
T  2713040 ctactctccttcatacagaatccacaggtcttctctct 2713003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 14668004 - 14667830
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| ||||||| ||| ||||| ||| |||||| ||  || ||||||||||||||||||||| |||||| ||| |||||  |||||||||||||| |||    
T  14668004 caaattacaccataatgttctatcataaaccatacttggatccaactcattaatctctagatctttcttagtagcttctcttatagtttttctaggattt 14667905  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     |      |||||||||||||| | ||||   ||||||| || || ||||||||||| | ||| |||| |||||||||||    
T  14667904 cc-----gctgcctctagtgatataactataatccatctgatctactctccttactacataatgtacatgtcttctctct 14667830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 6889217 - 6889052
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| ||||||||||    ||||| ||||||||||| ||| ||| ||||||||||||  ||||||||||||||  || |||||       
T  6889217 ccataatgttctatcataaaccatattttggcccaactaattaatctctaaatctttcctaatagtttctcttatagtttttctaggccttcctctt--- 6889121  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
      |||| |||| | ||||||  |||||||||||||||| ||||||| | | |||| |||||||||||||||    
T  6889120 --cctcaagtggtttgactatcctccatctaatttattgtccttaccacataatccacaagtcttctctct 6889052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 18699003 - 18698894
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatct 143  Q
    ||||| ||||||| ||| ||||||| ||||||||||||| ||||| |||  |||||  ||||||||||||||| || ||     |||||||||||||| |    
T  18699003 atataacatatttctatccaactcactaatctctagatctttcttgatacattctcttatagtttttctaggtattcct-----ctgcctctagtgattt 18698909  T
Q  144 gactactctccatct 158  Q
    |||||||||||||||    
T  18698908 gactactctccatct 18698894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 7678691 - 7678542
Alignment:
Q  40 tattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtg 139  Q
    ||||||| ||| |||||  || ||||||||||||||||||||| |||| |||||||||||  || ||||| |||| | || ||     ||||||||||||    
T  7678691 tattataaaccgtatttcgatccaactcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcct-----ctgcctctagtg 7678597  T
Q  140 atctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||  |||||||     || ||||||||||| |||||||||| ||||| |||||    
T  7678596 atctgactatcctccatc-----tactctccttactacagaatctacatgtcttttctct 7678542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 30588662 - 30588511
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||||||| |||||||||  || ||||||||| ||||||||||| ||||||| | ||||||  ||||||||||||||| || ||      || |||| |    
T  30588662 tctattataaaccatatttcgatccaactcattcatctctagatctttcttaacaatttctcttatagtttttctaggtcttcct-----atgtctctcg 30588568  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctc 196  Q
    ||| |||||||  |||||  | || || ||||||||||| |||||||||||||||||||    
T  30588567 tgacctgactatcctcca--ttatctactctccttactacagaatctacaagtcttctc 30588511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 10082836 - 10082890
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||||||||||||    
T  10082836 caactcattaatctctagatccttgttactagtttctcttatagtttttctaggt 10082890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 33667626 - 33667572
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||||||||||||||||  |||||  |||||||||||||||    
T  33667626 caactcattaatctctagatccttcttaataacttctcttatagtttttctaggt 33667572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 38684686 - 38684617
Alignment:
Q  47 taccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||||| ||||||||   ||||||||||||||    
T  38684686 taccatatttctatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggt 38684617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 31636011 - 31636063
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||||||| ||||||| ||||||||| |||||||||| ||||||||||||||    
T  31636011 caactcattgatctctatatccttcttgatagtttctctaatagtttttctag 31636063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 28186866 - 28186925
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc-caatagtttttctaggttttt 120  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||||||| |||||||||    
T  28186866 caactcattaatctctaaatctttcttaatagtttctcttaatagtttttataggttttt 28186925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 9235271 - 9235153
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| |||||||||  || || |||||||||||||| ||| ||||||||||||||||   |||||||||||||| || ||     |    
T  9235271 ccataatgttctatcataaaccatatttcgatccagctcattaatctctatatctttcttaatagtttctc--ttagtttttctaggtcttcct-----c 9235179  T
Q  129 tgcctctagtgatctga-ctactctc 153  Q
    ||||||||||||||||| ||||||||    
T  9235178 tgcctctagtgatctgatctactctc 9235153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 9917541 - 9917595
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||| ||| |||| ||||||||||| ||||||||||||||||    
T  9917541 caactcattgatctctatatctttctaaatagtttctctaatagtttttctaggt 9917595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 199
Target Start/End: Original strand, 15489582 - 15489715
Alignment:
Q  61 tcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaa 160  Q
    |||| |||||||||| ||  || ||||||||||||||||  || |||||||||||| || ||     ||||||||||||||   ||||  ||||||||||    
T  15489582 tcaattcattaatctataagtctttcttaatagtttctcttattgtttttctaggtcttcct-----ctgcctctagtgattcaactatcctccatctaa 15489676  T
Q  161 tttattctccttactaaagaatctacaagtcttctctct 199  Q
    | || |||||||| || | ||||||||| ||||||||||    
T  15489677 tctactctccttaatacaaaatctacaaatcttctctct 15489715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 27998631 - 27998578
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||| |||||| |||||| |||||||||  |||||||||||||||    
T  27998631 aactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggt 27998578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 43475430 - 43475299
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||||||||||||||| |||| ||||||||||||||||  | |||||||||| ||||   | ||     ||| ||||||||||||||  |||||||| ||    
T  43475430 caactcattaatctctggatctttcttaatagtttctctta-agtttttctatgtttacttttt-----cctatagtgatctgactatcctccatctgat 43475337  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||||||||||| |  ||||||| |||||||||||    
T  43475336 ctactctccttactacaacatctacaggtcttctctct 43475299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 1174679 - 1174643
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1174679 aactcattaatctctagatccttcttaatagattctc 1174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 17213264 - 17213208
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||||||||||||||||||||| |||||||||| ||   ||||||||||| |||||    
T  17213264 aactcattaatctctagatccttgttaatagtttttcttctagtttttctaagtttt 17213208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 13625254 - 13625317
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttc 111  Q
    ||||||||| || |||||| ||||||||||| ||| ||| |||||||||||| | |||||||||    
T  13625254 accatatttctaatcaactaattaatctctacatctttcctaatagtttctcgattagtttttc 13625317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 1525835 - 1525781
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| |||||| |||||||| ||||||||||||   ||||||||||||||    
T  1525835 caactcatttatctctggatccttcctaatagtttctcttgtagtttttctaggt 1525781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 1275458 - 1275401
Alignment:
Q  59 attcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||| ||||| ||||||  |||| ||||||| ||||||||||||||||    
T  1275458 attcaactgattaacctctaaatcctttataatggtttctctaatagtttttctaggt 1275401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 1935313 - 1935276
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  1935313 caactcatttatctctagatccttcctaatagtttctc 1935276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 2066195 - 2066134
Alignment:
Q  55 ttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||| ||||||||||||||||||||| || ||| ||||||||   ||| |||||||||||    
T  2066195 ttttatccaactcattaatctctagatcttttttagtagtttcttttataatttttctaggt 2066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 8492425 - 8492454
Alignment:
Q  63 aactcattaatctctagatccttcttaata 92  Q
    ||||||||||||||||||||||||||||||    
T  8492425 aactcattaatctctagatccttcttaata 8492454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 20367098 - 20367049
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttc 97  Q
    |||||||||  || ||||||||||||||||||||||||| || |||||||    
T  20367098 accatatttggatccaactcattaatctctagatccttcctactagtttc 20367049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 28005725 - 28005692
Alignment:
Q  63 aactcattaatctctagatccttcttaatagttt 96  Q
    |||||||||||||||||||| |||||||||||||    
T  28005725 aactcattaatctctagatctttcttaatagttt 28005692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 29922468 - 29922423
Alignment:
Q  69 ttaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    |||||||||| ||| ||||||||||||||||  |||||||||||||    
T  29922468 ttaatctctaaatctttcttaatagtttctcttatagtttttctag 29922423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 39322146 - 39322191
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    |||||| ||| |||||||||||||| |||||| |||||||||||||    
T  39322146 atatttctatccaactcattaatctttagatctttcttaatagttt 39322191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 4460408 - 4460337
Alignment:
Q  52 tatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||| ||| |||||||||||||||||| || ||||||||||| |||   | |||||||||||||||| ||||    
T  4460408 tatttctatccaactcattaatctctaggtctttcttaatagtctctttta-agtttttctaggttttcctct 4460337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 21093879 - 21093811
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||||||||||  |||||||| || || |||| |||||| | ||||| ||||||||| ||||    
T  21093879 cctctagtgatctgactatcctccatctgatctactctctttactacaaaatctccaagtcttccctct 21093811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 47147564 - 47147455
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| || ||     ||||||||||||||| ||||||||||||||| ||    
T  47147564 caactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtcttcct-----ctgcctctagtgatccgactactctccatctgat 47147470  T
Q  162 ttattctccttacta 176  Q
    ||| |||||||||||    
T  47147469 ttactctccttacta 47147455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 8459100 - 8459258
Alignment:
Q  36 gatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctct 135  Q
    ||||||| ||||||||||| || ||||||||| |||||||||||||  ||||||||||||| ||   |||||||| ||||| || ||     |||||| |    
T  8459100 gatctatcatataccatatattcattcaactctttaatctctagatttttcttaatagtttatcttttagtttttttaggtcttcct-----ctgccttt 8459194  T
Q  136 agtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||| |||||||||  ||| |||| || |||||||| || |||||||||| |||||||||||    
T  8459195 agtgatttgactactcctcatgtaatctactctccttattacagaatctacatgtcttctctct 8459258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 54470416 - 54470266
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatct 143  Q
    ||||||||||||| ||| ||||||||||||||||||| | || ||||||| |||||  ||||||||||| ||| |   ||||   |||||||||| || |    
T  54470416 atataccatatttctatccaactcattaatctctagaactttattaatagattctcttatagtttttcttggtct---tctt--ttgcctctagtaattt 54470322  T
Q  144 gactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||||| | ||||| ||||||||||| | ||| |||| |||||||||||    
T  54470321 gactactctccatttgatttactctccttactacataatttacatgtcttctctct 54470266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 31961357 - 31961489
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||| ||||||||||| ||| ||||||||||||  ||||||||||||||| |  |     ||| ||||||||||| ||||| |||||||||||||    
T  31961357 caactcatttatctctagatctttcctaatagtttctcttatagtttttctaggtctacc-----cctacctctagtgatttgactcctctccatctaat 31961451  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
      | |||||| |||| |||||| |||||||||||||||    
T  31961452 ccactctcctaactacagaatccacaagtcttctctct 31961489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 10209227 - 10209173
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  10209227 caactcattaatctctagatccttcttaatagtttctcttatagtttttctaggt 10209173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 42639078 - 42639243
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| | ||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||    ||||||||||| | || ||     |    
T  42639078 ccataatgttctatcaaataccatatttctatccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttctagatattcct-----c 42639172  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    | ||||||||||| ||||| | ||||||||||||||  | |||||| | |||||| | |||||||||||||    
T  42639173 tacctctagtgatttgactcccctccatctaatttaccccccttaccacagaatccataagtcttctctct 42639243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 28351750 - 28351618
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||| ||||||||| ||| ||| ||||||||||||  ||||||||||||||| |||||     || ||||| || |||||||||  |||||||| ||    
T  28351750 caactcaataatctctaaatctttcgtaatagtttctcttatagtttttctaggtctttct-----ctacctcttgtaatctgactatcctccatctgat 28351656  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||||||||||| ||| |||||| |||||||||||    
T  28351655 ctactctccttactacagagtctacaggtcttctctct 28351618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 31897519 - 31897651
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||| ||||||||||||||| ||||||||||||  ||||||||||||||| |  |     ||| ||||||||||||||||| | |||||||||||    
T  31897519 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggtctacc-----cctacctctagtgatctgactcccctccatctaat 31897613  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
      | |||||| |||| |||||| ||| |||| ||||||    
T  31897614 cgactctcctaactacagaatccacaggtctgctctct 31897651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 34233091 - 34233235
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||| ||| |||||| ||  ||||||||||||||||| || || | |||||||||||  |||||||||||||||||| ||     ||||||||||    
T  34233091 tctatcataaaccttattttgatctaactcattaatctctaggtctttatgaatagtttctctgatagtttttctaggttttcct-----ctgcctctag 34233185  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctaca 187  Q
    ||||||||| |  |||||||| || || ||||||||||| | ||||||||    
T  34233186 tgatctgacgatcctccatctcatctactctccttactacataatctaca 34233235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 7681978 - 7682109
Alignment:
Q  39 ctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagt 138  Q
    |||| ||||||||||||| |||  ||||||||||||| |||||  ||||| ||||||||||  |||||||||| |||| || ||     |||||||||||    
T  7681978 ctatcatataccatatttctatctaactcattaatctatagatttttcttgatagtttctcttatagtttttccaggtcttcct-----ctgcctctagt 7682072  T
Q  139 gatctgactactctccatctaatttattctccttact 175  Q
    ||| ||||||| ||||||||||| || | ||||||||    
T  7682073 gatgtgactaccctccatctaatctactttccttact 7682109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 21879308 - 21879374
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctct 197  Q
    ||||| ||||| | ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||    
T  21879308 cctctggtgatttcactaccctccatctaatctattctccttactaaagaatctacatgtcttctct 21879374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 934522 - 934574
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  934522 caactcattaatctctagaactttcttaatagtttctctaatagtttttctag 934574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 20999209 - 20999137
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| |||||| ||||||||||||||||| ||||||||| ||||||||||||| |   |||||||||||||||    
T  20999209 atatgccatatatttattcaactcattaaactctagatctttcttaatagtttatattatagtttttctaggt 20999137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 37042713 - 37042792
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| |||||||| ||| ||||| | ||||| ||||| ||| ||||||| ||||||||||||| ||||||||||||||||    
T  37042713 caaacgacaccataatgttctatcaaataccgtatttctatccaactcaataatctctagatctttcttaatagtttctc 37042792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 6843839 - 6843769
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||| ||||||||||| ||||||| |||  |||||||||||||||||||| ||||||||||| ||||    
T  6843839 ccataatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagtctctc 6843769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 26356810 - 26356756
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||||||| ||| ||||||||  |||||||||||||||    
T  26356810 caactcattaatctctagatccttcataacagtttctcttatagtttttctaggt 26356756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 46372215 - 46372161
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||    
T  46372215 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggt 46372161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 44047426 - 44047491
Alignment:
Q  27 caccattatgatct-attatataccatatttttattcaactcattaatctctagatccttcttaat 91  Q
    |||||||||| ||| || |||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  44047426 caccattatgctcttatcatataccatattattatccaactcattaatctctagatctttcttaat 44047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 47372884 - 47372795
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    |||| ||| |||| ||| ||||| ||||||||||||| ||| |||||||||||||||| |||| || ||| |||||||||  ||||||||    
T  47372884 caaacgactccataatgttctataatataccatatttctatccaactcattaatctctggatctttattagtagtttctcttatagtttt 47372795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 2589277 - 2589209
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||| || |||||||||||||||||||||| |||| ||||||||||  ||  |||||||||||    
T  2589277 accatattttcatccaactcattaatctctagatccatcttgatagtttctcttatgctttttctaggt 2589209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 26024900 - 26024988
Alignment:
Q  21 aaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    |||| ||||||| ||| ||||| ||| ||||| | |  || ||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  26024900 aaattacaccataatgttctatcataaaccatgtctcgatccaactcattaatctctagatctttcttaatagtttctcatatagtttt 26024988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 31403089 - 31403177
Alignment:
Q  26 acaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||||| ||| ||||| |||||||| |||| ||| ||||| ||||||||||||||| ||| ||||||||| ||  ||||||| |||||    
T  31403089 acaccataatgctctatcatataccacatttctatccaactaattaatctctagatctttcataatagtttttcttatagtttctctag 31403177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 37488296 - 37488228
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||| ||  |||| |||||| |||||||| ||||||||||||||||  |||||||||||||||    
T  37488296 accatattttgatcaaacttattaatttctagatctttcttaatagtttctcttatagtttttctaggt 37488228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 42293332 - 42293404
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagttttt 110  Q
    ||||| ||||||||||| | |||  ||||||||||| |||||||| ||||||||||||||||  |||||||||    
T  42293332 tctatcatataccatatgtctatctaactcattaatttctagatctttcttaatagtttctcttatagttttt 42293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 25575057 - 25574982
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtt 95  Q
    ||||| ||||||  ||| ||||| ||| |||||||||  || ||||||||||||||||||||| ||||||||||||    
T  25575057 caaattacaccacaatgttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 26025010 - 26025057
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    ||||||||||||||||||||| |||||||||||||||| || ||||||    
T  26025010 caactcattaatctctagatctttcttaatagtttctcaaaaagtttt 26025057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 33710129 - 33710078
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  33710129 accatatttctatccaactcattaatctctagatcagtcttaatagtttctc 33710078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 13805323 - 13805488
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| |||||||||   | ||||| |||| |||| | ||| ||||| ||||||||||  |||||||||||||||||| ||     |    
T  13805323 ccataatgttctatcataaaccatatttccgtccaacttattactctcaaaatctttcttcatagtttctcttatagtttttctaggttttcct-----c 13805417  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||| |  |||||| | || || ||||||| ||| | |||||| | |||||||||||    
T  13805418 tgcctctagtgatctgacaatcctccatgtgatctagtctccttgctacaaaatctaaaggtcttctctct 13805488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 49738641 - 49738695
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||| |||||||||||||||||||||| |   |||||||||||||||    
T  49738641 caactcattaatttctagatccttcttaatagtttttattatagtttttctaggt 49738695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 50680931 - 50680877
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||| |||| |||| ||||||  |||||||||||||||    
T  50680931 caactcattaatctctagatctttctaaataatttctcttatagtttttctaggt 50680877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 53540514 - 53540401
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| ||||||||||| | ||||||||||||||| |  || ||| ||||||||| ||  ||||||||||||||| || ||     |    
T  53540514 ccataatgttctatcataaaccatatttttgtccaactcattaatctccaagtctttcctaatagtttatcttatagtttttctaggtcttcct-----c 53540420  T
Q  129 tgcctctagtgatctgact 147  Q
    |||||||||||||||||||    
T  53540419 tgcctctagtgatctgact 53540401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 11389851 - 11389794
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaa 188  Q
    ||||||||||| |||||||| ||||||| || || ||||||||||| |||||||||||    
T  11389851 cctctagtgatttgactactttccatcttatctactctccttactacagaatctacaa 11389794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 29182643 - 29182606
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29182643 caactcattaatctctagatacttcttaatagtttctc 29182606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 41192270 - 41192221
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatag 93  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||| ||||    
T  41192270 atataccatatttctatccaactcattaatctctagatctttctttatag 41192221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 2557739 - 2557815
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||| ||| |||||||||  || |||||| |||||||  ||||||||||||||||||||||  | |||||||||||    
T  2557739 tctatcataaaccatatttcgatccaactcgttaatcttcagatccttcttaatagtttctcttacagtttttctag 2557815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 7544615 - 7544651
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||||||||||| ||||||||||||||||    
T  7544615 aactcattaatctctagatctttcttaatagtttctc 7544651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 31339665 - 31339595
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||| |||||||||| ||| | || || | ||||||||| | ||||||||||||||||||||    
T  31339665 ctgcctctagtgat-tgactactcttcatttgatctactatccttactacataatctacaagtcttctctct 31339595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 44385063 - 44384988
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtt 95  Q
    ||||| ||| ||| ||| ||||| ||| ||||||||  ||| ||||| ||||||||||||||| ||||||||||||    
T  44385063 caaattacatcataatgttctatcataaaccatattaatatccaacttattaatctctagatctttcttaatagtt 44384988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 21879218 - 21879292
Alignment:
Q  36 gatctattatataccatatttttattcaactcattaatctctagatccttctt-aatagtttctccaatagtttt 109  Q
    ||||||| ||||| ||||| | ||| ||||||||| ||||||||||| ||||| |||||||||||  ||||||||    
T  21879218 gatctatcatatatcatatctctatccaactcattcatctctagatctttcttgaatagtttctcttatagtttt 21879292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 45204906 - 45204984
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||| |||||||||  || ||||| ||||| ||||| ||| ||| ||||||||||||  |||||||||||||||    
T  45204906 tctatcataaaccatatttggatccaacttattaaactctaaatctttcctaatagtttctcttatagtttttctaggt 45204984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 55029054 - 55028984
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaa 90  Q
    |||||||| |||| ||| ||||| ||||| ||||||| |||  | |||||||||||||||||| |||||||    
T  55029054 caaatgacgccataatgttctatcatataacatatttctatctagctcattaatctctagatcattcttaa 55028984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 5306501 - 5306452
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttc 97  Q
    |||||||||  || ||||||||||||||||||||||||| || |||||||    
T  5306501 accatatttggatccaactcattaatctctagatccttcctactagtttc 5306452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 8599033 - 8599086
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||  | |||||| ||||||||||||||||  |||||||||||||||    
T  8599033 aactcattaacatttagatctttcttaatagtttctcttatagtttttctaggt 8599086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 22420775 - 22420843
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttct 98  Q
    |||| ||| ||||| || |||||||| | ||| ||||||||||||||||||||| ||||| |||||||||    
T  22420775 ccataatgctctatcatttaccatatctctatccaactcattaatctctagatctttctt-atagtttct 22420843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 33225925 - 33225978
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||||| ||| ||||||||||||||||  ||| |||||||||||    
T  33225925 aactcgttaatctctaaatctttcttaatagtttctcttataatttttctaggt 33225978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 44719410 - 44719509
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatc---tctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| |||||||| ||| ||||||||||||| ||||| |||  |||||||||||    | |||||| |||||||||||||||   ||| |||||||||||    
T  44719410 caaacgacaccataatgctctattatataccgtatttctatctaactcattaataatatttagatctttcttaatagtttcttttatattttttctaggt 44719509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 20105567 - 20105659
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttct 112  Q
    |||||||| |||| |||  |||| |||||||||||||   | |||||||| |||||||||||| |||||| | ||||||   |||||||||||    
T  20105567 caaatgacgccataatgtcctatcatataccatatttcagtccaactcatcaatctctagatctttcttagtcgtttcttttatagtttttct 20105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 23906346 - 23906442
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||  || ||||| ||| |||| ||||  || ||||||||| | ||||| ||||||  |||| ||||||| ||||||||||||||||    
T  23906346 caaatgacgccatagtgttctatcatacaccaaatttggatccaactcattgacctctaaatcctttctaatggtttctctaatagtttttctaggt 23906442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 28497596 - 28497548
Alignment:
Q  151 ctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||| || || ||||||||||| | ||||||||||||||||||||    
T  28497596 ctccatctgatctactctccttactacataatctacaagtcttctctct 28497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 31959863 - 31959959
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||  || ||||| ||| |||| ||||  || ||||||||| | ||||| ||||||  |||||||||||| ||||||||| ||||||    
T  31959863 caaatgacgccatagtgttctatcatacaccaaatttggatccaactcattgacctctaaatcctttctaatagtttctctaatagttttcctaggt 31959959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 42285794 - 42285830
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttct 98  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  42285794 caactcatttatctctagatccttcctaatagtttct 42285830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 199
Target Start/End: Complemental strand, 21200755 - 21200607
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctga 145  Q
    ||||||||||| ||| |||||||||||| |||||||| |||| |||||||| || |||||||||||||||| || ||     || || |||||||| |||    
T  21200755 ataccatatttctatccaactcattaatatctagatctttctaaatagtttgtctaatagtttttctaggtcttcct-----ctccccctagtgatttga 21200661  T
Q  146 ctactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| | || || ||||||||||  |||||||||| |||||||||||    
T  21200660 ctactctccatgtgatctactctccttactgcagaatctacatgtcttctctct 21200607  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 36820068 - 36820128
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttct 122  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  36820068 caactcattaatctctagatctttcttaatagtttctcttatagtttttctaggtatttct 36820128  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 36304108 - 36304037
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| |||||||||| ||| |||| || ||||||||||||||||| ||||||| |||||||||||    
T  36304108 ctgcctctagtaatctgactaccctctatctgatctattctccttactaaagcatctacaggtcttctctct 36304037  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 26990404 - 26990350
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||    
T  26990404 caactcattgatctctagatccttcttgatagtttctctaatagtttttctaggt 26990350  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 55244511 - 55244414
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc-caatagtttttctaggt 116  Q
    |||| |||||||| ||| ||||| ||||||||||||| ||| ||||||||||||||||||||  ||||||| | ||||||  || |||||||||||||    
T  55244511 caaacgacaccataatgttctatcatataccatatttctatccaactcattaatctctagatttttcttaagaatttctcttaagagtttttctaggt 55244414  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 2340810 - 2340870
Alignment:
Q  64 actcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||| |||||| |||||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtctttctct 2340870  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 46431770 - 46431886
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||||||||||||||| || |||||||||||||  |||||||||||||    ||||     |||||||||||||| ||| ||  |||||||| ||    
T  46431770 caactcattaatctctagatcttttttaatagtttctcttatagtttttctag----ttct-----ctgcctctagtgatttgagtatcctccatcttat 46431860  T
Q  162 ttattctccttactaaagaatctaca 187  Q
     || ||||||||||| ||||||||||    
T  46431861 ctactctccttactacagaatctaca 46431886  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 36304180 - 36304123
Alignment:
Q  39 ctattatataccatatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    |||| ||| |||||||||| || ||||||||||||||||||||| |||||||||||||    
T  36304180 ctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttt 36304123  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 43308784 - 43308699
Alignment:
Q  31 attatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||| ||||| ||||| ||||| | ||| ||||| ||||||||||||||  ||||||||||||||||   ||||||||||||||    
T  43308784 attatgttctatcatatatcatatctctatccaactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggt 43308699  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 11581637 - 11581581
Alignment:
Q  60 ttcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||| |||| |||||| ||||||||||||||||  |||||||||||||||    
T  11581637 ttcaactcatttatctatagatctttcttaatagtttctcttatagtttttctaggt 11581581  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 37351612 - 37351544
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||| ||| | || |||||||||||||||||| ||||| || ||||||| ||||||||||||||||    
T  37351612 accatatctttctccatctcattaatctctagatctttcttgattgtttctctaatagtttttctaggt 37351544  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 39600730 - 39600826
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||| ||| |||||  || |||| ||||  || ||||||||||| ||||| ||| ||||||||||||||||  |||||||||||||||    
T  39600730 caaattacaccataatgttctatcgtaaaccagatttggatccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggt 39600826  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 41087941 - 41087881
Alignment:
Q  56 tttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||||| ||||||||||||| |||||   |||||||||| ||||    
T  41087941 tttattcaactcattaatctctaaatccttcttaataatttcttttatagtttttccaggt 41087881  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 41452819 - 41452882
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||  |  ||||||||||||    
T  41452819 catatatttatccaactcattaatctctagatctttcttaatagtttaacttatagtttttcta 41452882  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 42026585 - 42026759
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| || |||| ||| ||||| ||||||||||||| |||  |||||||||||| ||| |||  |||||||||||||||  |||| |||  | ||| ||    
T  42026585 caaataacgccataatgttctatcatataccatatttctatctaactcattaatccctatatcaatcttaatagtttctcttatagctttgattggtctt 42026684  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     ||     |||||||||| ||| ||| ||  |||| ||| || || ||||||||||||| ||||||||||| ||||||||    
T  42026685 cct-----ctgcctctagggatgtgattatcctccgtctgatctactctccttactaaataatctacaagttttctctct 42026759  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 47804721 - 47804816
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    |||| ||| ||||| ||||| ||| | | ||||||||||||||||||||| ||| |||||||| |||||||   | ||||||||| ||||||||||    
T  47804721 ccataatgttctatcatatagcatgtctctattcaactcattaatctctaaatctttcttaatcgtttctcatgtggtttttctaagtttttctct 47804816  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 27893280 - 27893226
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||| ||||| |||||||||||||  ||||| |||||||||    
T  27893280 caactcattaatctctaggtcctttttaatagtttctcttatagtctttctaggt 27893226  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 49841840 - 49841770
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||| ||||| |||||||||||||  || |||||||||||||| |||||| || |||||||||||||    
T  49841840 ccataatgttctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagtttctc 49841770  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 44443295 - 44443348
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctagg 115  Q
    |||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||    
T  44443295 caactcatcaatctctagatcattcttaaaagtttctcttatagtttttctagg 44443348  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 3870619 - 3870667
Alignment:
Q  151 ctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  3870619 ctccatctgatttactctcctaactatagaatctacaagtcttctctct 3870667  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 29475877 - 29475841
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttct 98  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29475877 caactcattaatctctagatctttcttaatagtttct 29475841  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 50960686 - 50960782
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||| ||| ||||| ||| |||||||||  || ||||||||||||||||| | | ||| ||||||||||||  | | |||||||||||    
T  50960686 caaattacaccataatggtctatgatacaccatatttggatccaactcattaatctctaaacctttcctaatagtttctcttaaattttttctaggt 50960782  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 45289158 - 45289229
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    ||||| ||| |||||||||  || ||||||||||||||||| ||| ||| ||||||||||||  ||||||||    
T  45289158 tctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctcttatagtttt 45289229  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 45493750 - 45493837
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||| ||||| ||||||||| ||| ||| || |||||||| |||| |||| |||||||||||||||   ||||||| |||||||    
T  45493750 ccataatgctctatcatataccatgtttctatccagctcattaacctctggatctttcttaatagtttcttttatagtttatctaggt 45493837  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 29375059 - 29374993
Alignment:
Q  133 tctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||| ||||| |||||||||||| ||  |||||||||| | |||||||| ||||| |||||    
T  29375059 tctagtgatcagactattctccatctaatctacactccttactacaaaatctacaggtcttttctct 29374993  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 33307307 - 33307257
Alignment:
Q  60 ttcaactcattaatctctagatccttcttaatagtttctccaatagttttt 110  Q
    ||||||||||||||||||||||| |||||||| ||||| |  |||||||||    
T  33307307 ttcaactcattaatctctagatctttcttaatggtttcccttatagttttt 33307257  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 33755433 - 33755495
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    |||||||||||||||||  |  ||| ||||||||||||  |||||||||||||||||| ||||    
T  33755433 caactcattaatctctaagtttttcctaatagtttctcttatagtttttctaggttttcctct 33755495  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 40116559 - 40116613
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||| |||  || ||||||||||||  |||||||||||||||    
T  40116559 caactcattaatctctaaatctatcctaatagtttctcttatagtttttctaggt 40116613  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 40982087 - 40982033
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||||||| |||||||| |||||||||||| |||  |||||||||||||||    
T  40982087 caacacattaatatctagatctttcttaatagttactcttatagtttttctaggt 40982033  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 43255078 - 43255028
Alignment:
Q  66 tcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||||||||||| | ||||||||||  |||||||||||||||    
T  43255078 tcatttatctctagatccttcctgatagtttctctcatagtttttctaggt 43255028  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 197
Target Start/End: Original strand, 42510093 - 42510237
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    ||||||||||  | ||||||||| || || | ||| ||| |||| |||||||  ||||||||||||||| || || |     ||||||||||||||||||    
T  42510093 accatattttggtccaactcatttatttccaaatctttcctaatggtttctctgatagtttttctaggtcttccttt-----gcctctagtgatctgact 42510187  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctct 197  Q
    |  |||||||| || || ||||||||| | | |||||| | |||||||||    
T  42510188 atcctccatctgatctactctccttaccacaaaatctataggtcttctct 42510237  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 2199029 - 2198977
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    |||||||||||| ||||| || ||||||||| |||||| |||| |||||||||    
T  2199029 caactcattaatatctaggtcgttcttaataatttctctaataatttttctag 2198977  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 7278645 - 7278593
Alignment:
Q  67 cattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||| ||||||||||| ||| ||| ||||||||  ||||||||||||||||||    
T  7278645 cattgatctctagatctttcgtaacagtttctcttatagtttttctaggtttt 7278593  T

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Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 11284197 - 11284136
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    ||||||||||||| ||| |||||||||||||||||    | |||||||||||||||  ||||||||    
T  11284197 atataccatatttatatccaactcattaatctcta----catcttaatagtttctcttatagtttt 11284136  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 33307243 - 33307187
Alignment:
Q  143 tgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||| |||||||| ||||| ||| ||| ||| |||||||||| |||||||||||    
T  33307243 tgactaccctccatctgatttactcttcttcctatagaatctacatgtcttctctct 33307187  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37598219 - 37598314
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| |||| ||| ||||| ||||| ||||    ||| ||||||||||||||||||||   |||||||||||||||  | |||||||||||||    
T  37598219 caaatgacgccataatgttctatcatatatcatacccctatccaactcattaatctctagatatatcttaatagtttctctta-agtttttctaggt 37598314  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 50249514 - 50249446
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||| ||||| ||||||  | |||||| || || |||||||||||||||||||||| |||||| ||||    
T  50249514 cctctggtgatatgactatcccccatctgatctactctccttactaaagaatctacatgtcttcactct 50249446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 56)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 38869115 - 38868941
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||| ||| |||| ||| ||||| ||||||||||| | ||| |||| |||||||| ||||||| ||||||||| ||||||  ||||||||||||||| |     
T  38869115 caaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttcttaataatttctcttatagtttttctaggtct- 38869017  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
      ||||  ||||||||| |||| ||||||| ||||||||||| || ||||||  ||| ||||||||| ||| ||||||||    
T  38869016 --tctt--ctgcctctaatgatttgactaccctccatctaatctactctcctcgctagagaatctactagtgttctctct 38868941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 33560931 - 33561083
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatct 143  Q
    ||||||||||||| ||| ||||||  ||||||||||||| | |||||||||||| |  | ||||||||||||  || ||||     |||||||||||| |    
T  33560931 atataccatatttatatccaactcgctaatctctagatcttacttaatagtttcccttacagtttttctaggacttcctct-----gcctctagtgattt 33561025  T
Q  144 gactactctccatctaatttattctccttactaaagaatctacaagtcttctctctct 201  Q
    |||||| |||||||  || || ||||||||||| |||||||||| |||||||||||||    
T  33561026 gactaccctccatcatatctactctccttactacagaatctacaggtcttctctctct 33561083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 195
Target Start/End: Original strand, 3818933 - 3819075
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||  |||||||||| |||| || |||||      |||||||| | ||| |    
T  3818933 accatatttctattcaactcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtcttcctctt-----tctctagtggtttgatt 3819027  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttct 195  Q
    || |||||||| || || |||| |||||| |||||| |||||||||||    
T  3819028 accctccatctgatctactctctttactagagaatccacaagtcttct 3819075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 6025838 - 6025690
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||||||| |||| ||| ||||| | ||||||||||| ||| ||||||||||||||||||||| || ||| |||| ||||  ||||||||||||||| ||    
T  6025838 caaatgacgccatcatgttctatcagataccatatttctatccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtctt 6025739  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctcctta 173  Q
     ||     |||||||||||||| ||||||| || ||||| || || ||||||||    
T  6025738 cct-----ctgcctctagtgatttgactaccctacatctgatctactctcctta 6025690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 43423924 - 43423778
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||| || ||||   || ||||||||||| || ||||      ||||||||||| |||||    
T  43423924 accatatttctatccaactcactaatctctagatctttcttaatggtctctcttgtaatttttctaggtcttcctcta-----cctctagtgatttgact 43423830  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||| |||||||| | || ||| ||||||| | ||||||||||||||||||||    
T  43423829 actatccatctagtctactctacttactacataatctacaagtcttctctct 43423778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 42501323 - 42501237
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||| |||| |||||||| ||| |||||||||||||| |||||| ||||||||| ||||||  |||||||||||||||||| ||||    
T  42501323 tctatcatattccatatttctatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggttttcctct 42501237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 30834052 - 30834200
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctga 145  Q
    |||| |||||| ||| ||||||||||||||||||||| ||| ||||||||||||  |||| |||||||||| || ||     || ||||||  ||| |||    
T  30834052 atactatatttctatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtcttcct-----ctccctctatcgatttga 30834146  T
Q  146 ctactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||  ||||||| || || |||||||| || ||||||| ||||||||||||||    
T  30834147 ctaccttccatctgatctactctccttattatagaatctgcaagtcttctctct 30834200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 40416598 - 40416430
Alignment:
Q  26 acaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctctt 125  Q
    ||||||| ||| ||||| ||| |||||||||  || |||||||||||||| |||||| ||||||||||||| ||  ||||||||||||||| |   ||||    
T  40416598 acaccataatgttctatcataaaccatatttcgatccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtct---tctt 40416502  T
Q  126 gcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
      ||| || | ||||||||||||  || ||||| || || ||||||||||| | ||||||||  ||||||||||    
T  40416501 --ctgtctttggtgatctgactatcctgcatctgatctactctccttactacaaaatctacagttcttctctct 40416430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 32404575 - 32404749
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| || |||||||| | ||| ||| ||||| |||  ||| |||||||||||||||| ||| ||| ||||||||||||  ||||||||| ||||| ||    
T  32404575 caaattacgccattatgttatatcataaaccatgtttggatttaactcattaatctctaaatctttcctaatagtttctcttatagtttttgtaggtctt 32404674  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     ||     || ||||| ||||| ||||||  ||||||||  | || ||||||||||| |||||||||| |||||||||||    
T  32404675 cct-----ctacctcttgtgatatgactatcctccatcttctctactctccttactatagaatctacaggtcttctctct 32404749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 29808061 - 29807993
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||||| ||||| | |||||||||||| || |||||||  |||||||||||||||    
T  29808061 accatatttttattcaactcgttaatatttagatccttcttgatcgtttctcttatagtttttctaggt 29807993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 5338854 - 5338783
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||| ||  |||||||| || || |||||||||||||| ||||||| |||||||||||    
T  5338854 ctgcctctagtgatctgaatatcctccatctgatctactctccttactaaagcatctacaggtcttctctct 5338783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 8796433 - 8796291
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcc 128  Q
    |||| ||| ||||| ||| |||||||||  || ||| |||||||| |||||||| ||||||||||||||||  | ||||||| | ||| || ||     |    
T  8796433 ccataatgttctatcataaaccatatttcaatccaagtcattaatatctagatctttcttaatagtttctcttaaagtttttattggtcttcct-----c 8796339  T
Q  129 tgcctctagtgatctgactactctccatctaatttattctccttacta 176  Q
    ||||||||||||||||||||  |||||||  ||||| |||||||||||    
T  8796338 tgcctctagtgatctgactatcctccatccgatttactctccttacta 8796291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 8203225 - 8203279
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  8203225 caactcattaatctctagatcttttttaatagtttctcttatagtttttctaggt 8203279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 8342956 - 8343026
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| |||||| ||| ||||||||||||||||||||| || ||||| |||||||  |||||||||||||||    
T  8342956 atactatatttctatccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggt 8343026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 19969303 - 19969357
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||| || |||||||||||||  |||||||||||||||    
T  19969303 caactcattaatctctagatctttgttaatagtttctcttatagtttttctaggt 19969357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 28528546 - 28528492
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  28528546 caactcattaatctctagatccttcttaatagtttctgttatagtttttttaggt 28528492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 990525 - 990680
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||| ||||||| || || |||||||||||||||||||||  ||| ||||||||||| ||||||||| | | ||  ||| ||   ||||||  ||    
T  990525 tctatcataaaccatatgttgatccaactcattaatctctagatctatctcaatagtttctctaatagttttccaatgtgcttc-ct---ctgcctacag 990620  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctct 197  Q
    |||||||||||   |||||||||| || ||||||| ||| |||||||| | |||||||||    
T  990621 tgatctgactatattccatctaatctactctccttgctacagaatctatatgtcttctct 990680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 17815712 - 17815564
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||| |||||||  ||| ||||| ||||||||||||| |||  ||||||| |||| ||||||| |||| |||||||||||  ||| ||||||||||| ||    
T  17815712 caaacgacaccaaaatgctctatcatataccatatttctatctaactcatcaatcactagatctttctaaatagtttctcttataatttttctaggtctt 17815613  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctcctta 173  Q
     |     | |||||| | |||| |||||||||||||||| ||||| ||| ||||    
T  17815612 cc-----cttgcctccaatgatttgactactctccatctgatttactcttctta 17815564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 43898437 - 43898290
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttctt---aatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctg 144  Q
    ||||| ||||| | |||||||||||||||||||||||||||   |||||||||||  |||||||||| |||| ||||     ||| ||| | ||||| ||    
T  43898437 accatgtttttctccaactcattaatctctagatccttcttctaaatagtttctcttatagtttttccaggtctttc-----cctacctttggtgatttg 43898343  T
Q  145 actactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||| | |||||||| || || ||||||||||| | ||||  ||||||||||||||    
T  43898342 actcccctccatctgatctactctccttactacataatc--caagtcttctctct 43898290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 853876 - 853967
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatct 158  Q
    ||||||| ||||||||||||||||||||||||||||||  |||| |||| ||||| || ||     |||||||||||||| |||||| ||| |||||    
T  853876 caactcactaatctctagatccttcttaatagtttctcgtatagattttttaggtcttcct-----ctgcctctagtgatttgactaatcttcatct 853967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 7762486 - 7762582
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||| ||| ||||||||| |||||||||  || |||||||||||  |||| ||| ||  ||||||||||||  |||||||||||||||    
T  7762486 caaattacaccataatgttctattataaaccatatttagatccaactcattaacatctaaatcttttctaatagtttctcttatagtttttctaggt 7762582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 28511850 - 28511977
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| || |||| ||| ||||| ||| ||||| ||||  | ||||||||||||||| |  || ||| || || |||||| |||||||||||||||| ||    
T  28511850 caaattacgccataatgttctatcataaaccatgttttggtccaactcattaatctccaagtctttcctagtaatttctctaatagtttttctaggtctt 28511949  T
Q  120 tctcttgcctgcctctagtgatctgactactct 152  Q
    |||     |||||||||||||||||||||||||    
T  28511950 tct-----ctgcctctagtgatctgactactct 28511977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 10569219 - 10569290
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||| ||| ||| ||||||||||| ||  |||| ||||| |||||||||| |||||||||||    
T  10569219 ctgcctctagtgatttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctct 10569290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 7083081 - 7083027
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||||||| ||| |||||||||||||||  |||| ||||||||||    
T  7083081 caactcattaatctctagttccatcttaatagtttctcttatagcttttctaggt 7083027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 7124374 - 7124284
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagttttt 110  Q
    |||| |||||||| ||| |||||  |||||||||||| ||| ||| |||||||||  |||||| |||| |||||||||||  |||||||||    
T  7124374 caaacgacaccataatgctctatcctataccatatttctatccaattcattaatcaatagatctttctcaatagtttctcttatagttttt 7124284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 39515946 - 39516016
Alignment:
Q  49 ccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||||||| || |||||||||||| ||||| |  ||||||||||||||||  |||||||||||| |||||    
T  39515946 ccatattttgatccaactcattaatttctaggtttttcttaatagtttctcgtatagtttttctaagtttt 39516016  T

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Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 40920578 - 40920640
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatc 82  Q
    |||| |||||||| ||  ||||| ||||||||||||| ||| |||||||||||||||||||||    
T  40920578 caaaagacaccataatattctatcatataccatatttctatccaactcattaatctctagatc 40920640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 43367710 - 43367772
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    ||||||||||||||||||||||||| |||||| || || |||||||||   ||||||||||||    
T  43367710 atatttttattcaactcattaatctttagatctttgttgatagtttcttttatagtttttcta 43367772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 50636296 - 50636238
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||||   ||||||||||||    
T  50636296 tctatcatataccatatttttatccaactcaataatctctagatttatcttaatagttt 50636238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 50771647 - 50771701
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||||||| ||||||||||||||||| |  |||||||||||||||    
T  50771647 caacttattaatctctaggtccttcttaatagtttcgcttatagtttttctaggt 50771701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 15577609 - 15577572
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  15577609 caactcattaatctctatatccttcttaatagtttctc 15577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 17640147 - 17640192
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||    
T  17640147 atatttttatccaactcattaatctctagatccttccttatagttt 17640192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26016627 - 26016574
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||| ||| ||||||||||||  |||||||||||||||    
T  26016627 aactcatttatctctagatcattcctaatagtttctcttatagtttttctaggt 26016574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 46388567 - 46388514
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctagg 115  Q
    |||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||    
T  46388567 caactcatcaatctctagatcattcttaaaagtttctcttatagtttttctagg 46388514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 46395011 - 46394958
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctagg 115  Q
    |||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||    
T  46395011 caactcatcaatctctagatcattcttaaaagtttctcttatagtttttctagg 46394958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 50806872 - 50806806
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||| |||| |||||||||||  ||||||||| ||||||||||  || ||||||||||||    
T  50806872 accatatttttatccaacgcattaatctct--atccttcttgatagtttctcttattgtttttctaggt 50806806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 10569138 - 10569198
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttct 98  Q
    ||||| |||||| |||||| ||| || || ||||||||||||||| |||||||||||||||    
T  10569138 tctatcatatacgatatttctatccagcttattaatctctagatctttcttaatagtttct 10569198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 29577219 - 29577267
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagttt 96  Q
    |||||||||| || || |||||||||||||||||| |||||||||||||    
T  29577219 accatattttgatccagctcattaatctctagatctttcttaatagttt 29577267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 12135898 - 12135859
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctcca 101  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  12135898 caactcattaatctctagatttttcttaatagtttctcca 12135859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 12231556 - 12231505
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    ||||||||||||||| ||||| ||||||||||| ||||  ||||||||||||    
T  12231556 caactcattaatctcgagatctttcttaatagtctctcttatagtttttcta 12231505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 13827722 - 13827793
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||||||   ||||| | || || ||||||||||| ||||||||||  ||||||||||    
T  13827722 ctgcctctagtgatctgactatgttccatatgatctactctccttactacagaatctacacttcttctctct 13827793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 30445302 - 30445251
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    |||||||||||||||||||||| |||| ||||||||||  || |||||||||    
T  30445302 caactcattaatctctagatccctcttgatagtttctcttatcgtttttcta 30445251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 51584932 - 51584881
Alignment:
Q  65 ctcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| || |||||| |||||||||||||||  |||||||||||||||    
T  51584932 ctcattaatgtccagatccctcttaatagtttctcttatagtttttctaggt 51584881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 13827647 - 13827689
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctaga 80  Q
    ||||| ||||||||||||| ||| |||||||||||||||||||    
T  13827647 tctatcatataccatatttctatccaactcattaatctctaga 13827689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 26299276 - 26299214
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||||||||| ||||| ||| ||| ||||||||||||  |||||||| ||||||||| ||||    
T  26299276 caactcattaacctctaaatctttcataatagtttctcttatagttttcctaggttttcctct 26299214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 27637722 - 27637776
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||| ||||||||||||| |||||||||| || ||||||| |||||    
T  27637722 caactcattgatcactagatccttcttgatagtttctctaaaagtttttttaggt 27637776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 29129010 - 29128920
Alignment:
Q  26 acaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||| ||| ||||| ||| |||||||||  || |||||  |||| ||||| ||| ||| ||||||||||||  |||||||||||||||    
T  29129010 acaccataatgttctatcataaaccatatttggatccaacttgttaacctctaaatctttcctaatagtttctcttatagtttttctaggt 29128920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 48861450 - 48861488
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatc 82  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  48861450 atataccatatttctatccaactcattaatctctagatc 48861488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 8676956 - 8677013
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||||||||||||||| ||| || |||||||||||||  |||| ||| |||||||||    
T  8676956 caactcattaatctctaaatcttttttaatagtttctcttatagatttcctaggtttt 8677013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 30396820 - 30396857
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  30396820 caactcattaatctctggatccttcttaacagtttctc 30396857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 46388468 - 46388435
Alignment:
Q  166 tctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| ||||||||||||||||||||||    
T  46388468 tctccttactacagaatctacaagtcttctctct 46388435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 46394912 - 46394879
Alignment:
Q  166 tctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| ||||||||||||||||||||||    
T  46394912 tctccttactacagaatctacaagtcttctctct 46394879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 10272443 - 10272395
Alignment:
Q  68 attaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||| |||||||||||||||||||||||||  |||  ||||||||||    
T  10272443 attaatttctagatccttcttaatagtttctcttataagttttctaggt 10272395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 25460186 - 25460226
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctcta 78  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  25460186 tctattatataccatatttctatcaaactcattaatctcta 25460226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 40419830 - 40419794
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttct 98  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  40419830 caactcatttatctctagatccttcataatagtttct 40419794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 52442613 - 52442673
Alignment:
Q  56 tttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||||||  |||||||||||||| ||||||||||  ||| || ||||||||    
T  52442613 tttatccaactcattaacatctagatccttcttgatagtttctcttatatttgttctaggt 52442673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 16351570 - 16351515
Alignment:
Q  61 tcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16351570 tcaactcattaatctctagatccttcttaatagtttctctaatagtttttctaggt 16351515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 24399837 - 24399942
Alignment:
Q  19 acaaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggttt 118  Q
    |||||||||| ||| ||  ||||| ||| |||||||||  || ||||||||||||||| ||||||||||||||||||||||  ||| |||||||| ||||    
T  24399837 acaaatgacatcataatattctatcataaaccatatttcaatccaactcattaatctcgagatccttcttaatagtttctcttataatttttctaagttt 24399936  T
Q  119 ttctct 124  Q
    | ||||    
T  24399937 tgctct 24399942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 29520882 - 29520709
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| || |||| ||| ||||| ||| |||||||||  || ||||||||||||||||| ||| ||| ||| ||||||||  ||||||||||||||  ||    
T  29520882 caaattacgccataatgttctatcataaaccatatttggatccaactcattaatctctaaatcgttcctaacagtttctcttatagtttttctagg-ctt 29520784  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     ||     || ||||| ||||| ||||||  |||||||| || || ||||||||||| | ||||||||||||||||||||    
T  29520783 cct-----ctacctcttgtgatttgactatcctccatctgatctactctccttactacaaaatctacaagtcttctctct 29520709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 35643673 - 35643751
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||| |||||||||  || ||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||    
T  35643673 tctatcataaaccatatttcgatccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggt 35643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 32043781 - 32043649
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||| |||| |||||||||||| |||||||||| |||||||||| ||||| || |     ||| ||||||||||| ||||  | |||||||| ||    
T  32043781 caactcattgatctttagatccttcttgatagtttctctaatagtttttttaggtcttcc-----cctacctctagtgatttgacacccctccatctgat 32043687  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     |||||||||||||| |  ||| ||| |||||||||||    
T  32043686 ctattctccttactacaacatccacaggtcttctctct 32043649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 38391960 - 38392116
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| |||||||||||||  || | |||||||||||| |||||| |||||||| |||||||  ||||||||||||||| || ||     ||| || |||    
T  38391960 tctatcatataccatatttcgatcccactcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtcttcct-----ctgtctatag 38392054  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||| |||||||| || ||||| |  || |||||| |||| |||||| ||| |||||||||||    
T  38392055 tgagctgactacccttcatctgacctactctcctcactacagaatcaacatgtcttctctct 38392116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 4011280 - 4011220
Alignment:
Q  56 tttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||  |||||||||||||||    
T  4011280 tttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggt 4011220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 38178333 - 38178479
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatct 143  Q
    ||||| ||||| | ||| |||||||||||| ||||| || || |||||||||||||  ||||||||||||||| || ||     || ||||||| ||| |    
T  38178333 atatatcatatctctatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtcttcct-----ctacctctagcgattt 38178427  T
Q  144 gactactctccatctaatttattctccttactaaagaatctacaagtcttct 195  Q
    |||||  |||||||| || || ||||||||||| | |||||||| |||||||    
T  38178428 gactatcctccatctgatctactctccttactacaaaatctacaggtcttct 38178479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 43733407 - 43733344
Alignment:
Q  53 atttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||   ||||||||||||||    
T  43733407 atttttatccaactcattaatctctagatccttctcgatagtttctcttgtagtttttctaggt 43733344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 7531735 - 7531789
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||    
T  7531735 caactcatttatctctagatccttcctaatagtttctcgtatagtttttctaggt 7531789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 16917398 - 16917320
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||| | ||| |||||||| || |||| ||||||||||    
T  16917398 tctatcatataccatatttctatccaactcattaatctctaaatcttccttgatagtttcacctatagcttttctaggt 16917320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 79260 - 79167
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    |||| ||| |||||||| ||||| | |  |||||||| ||| || |||||||||||||||||| ||||||||||||||||  ||||| ||||||    
T  79260 caaacgacgccattatgttctatcacaggccatatttctatccagctcattaatctctagatctttcttaatagtttctcttatagtgtttcta 79167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 5908849 - 5908705
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactac 149  Q
    |||||||| || |||||||||||||  | |||| || |||||||||||||  ||||||||||||||| || ||      || ||||||||||||||| |     
T  5908849 catattttgatccaactcattaatccttggatcttttttaatagtttctcttatagtttttctaggtcttcct-----atgtctctagtgatctgaccat 5908755  T
Q  150 tctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
     ||||| || || || ||||||||||| | |||||||| |||||||||||    
T  5908754 cctccacctgatctactctccttactacaaaatctacaggtcttctctct 5908705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 10109039 - 10108942
Alignment:
Q  27 caccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    |||||| ||| ||||| ||||| ||||| | |||  ||||| |||||||||||||| |||||| |||||||||  || |||||||||||| |||||||    
T  10109039 caccataatgttctatcatataacatatctctatcaaactcgttaatctctagatctttcttattagtttctcttatggtttttctaggtctttctct 10108942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 199
Target Start/End: Original strand, 16971845 - 16971977
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||||||||||||| || |||||||||||| |||||||  |||||||||||| ||||| |     | ||| ||||||||| | ||||| || ||||||||    
T  16971845 caactcattaatctttatatccttcttaatcgtttctcttatagtttttctaagttttcc-----cgtgcatctagtgatttcactacccttcatctaat 16971939  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||||||||||| |  ||||||| || ||||||||    
T  16971940 atactctccttactacaagatctacaggttttctctct 16971977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 39967590 - 39967643
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctagg 115  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  39967590 caactcattaatcgctagatctttcttaatagtttctcttatagtttttctagg 39967643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 23492266 - 23492178
Alignment:
Q  21 aaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    ||||||||||||  || ||||| ||||| ||||||| ||| ||||||||||||| ||| ||| |||| | ||||||||| |||||||||    
T  23492266 aaatgacaccatagtgttctatcatatatcatatttctatccaactcattaatcgctacatctttctgagtagtttctctaatagtttt 23492178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 16715403 - 16715332
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||| |||||||| ||||||||| |||||| || || ||| |||||||||||| ||||| |||||||||||    
T  16715403 ctgccactagtgatttgactactccccatctgatctactctacttactaaagaacctacatgtcttctctct 16715332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 16994535 - 16994598
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctctt 125  Q
    ||||||| ||||||||| ||| ||||||||||||||||  ||||||||||||||| || |||||    
T  16994535 caactcaataatctctaaatcattcttaatagtttctcatatagtttttctaggtcttcctctt 16994598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 30783111 - 30783225
Alignment:
Q  40 tattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtg 139  Q
    ||||||| ||| |||||  || ||||||||||||||||||||| |||| |||||||||||  || ||||| |||| | || ||     ||||||||||||    
T  30783111 tattataaaccgtatttcgatccaactcattaatctctagatctttctaaatagtttctcttatggttttactagatcttcct-----ctgcctctagtg 30783205  T
Q  140 atctgactactctccatcta 159  Q
    |||||||||  |||||||||    
T  30783206 atctgactatcctccatcta 30783225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 32931152 - 32931034
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    |||||||||||| || | ||| ||| ||||||||||||  ||||||||| ||||| || ||     |||||||||||||| ||||||  |||||||| ||    
T  32931152 caactcattaatttcaaaatctttcctaatagtttctctgatagtttttttaggtcttcct-----ctgcctctagtgatatgactatcctccatctgat 32931058  T
Q  162 ttattctccttactaaagaatcta 185  Q
     || ||||||||||| ||||||||    
T  32931057 ctagtctccttactacagaatcta 32931034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 10079986 - 10080052
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||| ||| ||||||||||||||||||||| ||||||| ||||| ||  ||||||| |||||||    
T  10079986 catatttctatccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggt 10080052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 23023416 - 23023362
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||| |||||| |||||| |||||||||  |||||||||||||||    
T  23023416 caactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggt 23023362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 27037842 - 27037764
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||||||||| ||| |||||||||||||| || ||| ||| ||||||||| ||  |||||||| |||||| |||||||    
T  27037842 ataccatatttctatccaactcattaatctttatatctttcctaatagtttatcgtatagttttactaggtctttctct 27037764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 39388984 - 39388919
Alignment:
Q  52 tatttttattcaactcattaatctctagatccttcttaatagtttctc-caatagtttttctaggt 116  Q
    ||||| ||| ||||||||||||||||||||| ||| ||||||||||||   |||||||||||||||    
T  39388984 tatttctatccaactcattaatctctagatctttcctaatagtttctctttatagtttttctaggt 39388919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 11733980 - 11733884
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||| |||| ||| ||||| | ||||||||||| |||  |||||||||||||||||||  ||||| ||||||||||   |||| |||||||||    
T  11733980 caaacgacgccataatgctctatcacataccatatttctatctaactcattaatctctagatttttctttatagtttctcttgtagtatttctaggt 11733884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 35362699 - 35362795
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| || |||| ||| ||||| ||| |||||||||   | |||||||||||| || | ||| ||| ||||||||||||| |||||||||||||||    
T  35362699 caaattacgccataatgttctatcatacaccatatttcagtccaactcattaatttccaaatctttcctaatagtttctccgatagtttttctaggt 35362795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 37826502 - 37826374
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||||||||||||| ||| ||||||  |||||||||||    |||||||||||||||  ||||||| ||||||| |  ||     ||||||||||    
T  37826502 tctatcatataccatatttctatccaactcgctaatctctaga----tcttaatagtttctcttatagtttatctaggtctccct-----ctgcctctag 37826412  T
Q  138 tgatctgactactctccatctaatttattctccttact 175  Q
    |||| |||||||||| ||||| || || | ||||||||    
T  37826411 tgatttgactactcttcatctgatctactttccttact 37826374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 13589682 - 13589619
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    |||||||| ||||||||||||||||| || ||| ||  ||||||||||||  ||||||||||||    
T  13589682 catattttgattcaactcattaatctttaaatcttttctaatagtttctcttatagtttttcta 13589619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 16705956 - 16705901
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||||  || |||||||||||||||||| |  ||||||||||||||||    
T  16705956 atataccatatttcgatccaactcattaatctctagctttttcttaatagtttctc 16705901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 17491712 - 17491799
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||| ||||| ||| ||||||||||  | ||||||||||||||| |  || ||||||||||||||||  | |||||||||||||    
T  17491712 ccataatgttctatcataaaccatattttggtccaactcattaatctccaagtctttcttaatagtttctcttacagtttttctaggt 17491799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 39051272 - 39051229
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctcct 171  Q
    |||||||||||||| |||||||||||||||| ||||| ||||||    
T  39051272 ctgcctctagtgatttgactactctccatctgatttactctcct 39051229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 30812907 - 30812961
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||| ||| |||||||   |||||||||||||||    
T  30812907 caactcatttatctctagatccttcctaacagtttcttgtatagtttttctaggt 30812961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 12966381 - 12966434
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaat 91  Q
    ||||| ||| |||||||||  |||||||||||||||||||| ||| ||||||||    
T  12966381 tctatcataaaccatatttgaattcaactcattaatctctaaatctttcttaat 12966434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 39953356 - 39953409
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||||||| ||||||||||||   ||||||| ||||||    
T  39953356 aactcatttatctctagatccttcctaatagtttctcttttagttttcctaggt 39953409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 28169597 - 28169529
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||  || ||||||||||||||| | ||| ||| ||||||||||||  ||||||||| |||||    
T  28169597 accatatttgaatccaactcattaatctcaaaatctttcctaatagtttctcttatagtttttttaggt 28169529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 29700403 - 29700351
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatc 183  Q
    ||||||||||| ||||||  ||||||||||| || ||||||||||| ||||||    
T  29700403 cctctagtgatatgactatcctccatctaatctactctccttactacagaatc 29700351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 38483048 - 38483092
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagt 94  Q
    ||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  38483048 catatttctatccaactcattaatctctagatctttctgaatagt 38483092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 30144966 - 30144834
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||  |      || |||||||||| |||| || |||||||| ||    
T  30144966 caactcattaatctctagatctttcttaatagtttctcgaatagtttttataggtcttatt-----ttgtctctagtgatttgaccaccctccatctgat 30144872  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || ||| | ||||| ||||||||||||||||||||||    
T  30144871 ctactcttcgtactatagaatctacaagtcttctctct 30144834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 1569231 - 1569154
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctagg 115  Q
    ||||| ||| |||||||||| || ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||    
T  1569231 tctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttactcttatagtttttctagg 1569154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 45601709 - 45601613
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||  || ||||| ||| | |||||||| || ||||||||||||||||||||| |||||||| |||||||  |||||||||||||||    
T  45601709 caaattacaccatagtgttctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggt 45601613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 5336109 - 5335979
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||||||||||||||| ||||||||||| ||||  |||||||||| ||||||| |     ||| |||| |||||| ||||| | |||||||||||    
T  5336109 caactcattaatctctagatcattcttaatagtatctc--atagtttttcaaggttttcc-----cctacctcgagtgatttgactcccctccatctaat 5336017  T
Q  162 ttattctccttactaaagaatctacaagtcttctctct 199  Q
     || |||||| |||| |||||| |||  ||||||||||    
T  5336016 ctactctcctaactacagaatccacagttcttctctct 5335979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 12966235 - 12966153
Alignment:
Q  34 atgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||| ||||||||||||| ||| ||| ||||||||||||| ||  ||||||||||||||||  |||||||||||||||    
T  12966235 atgatttatcatataccatatttctatccaaatcattaatctctaaatatttcttaatagtttctcttatagtttttctaggt 12966153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 40830393 - 40830339
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||| |||||||||||||||||||||||||  |||| ||||||||||    
T  40830393 caactcattaatttctagatccttcttaatagtttctcttatagattttctaggt 40830339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 24549763 - 24549816
Alignment:
Q  46 ataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||  || ||||||||||||||||||||| ||||||||||||||||    
T  24549763 ataccatatttcaatccaactcattaatctctagatctttcttaatagtttctc 24549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 28627982 - 28628154
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    ||||| || |||| ||| ||||| ||| |||| ||||  || ||||||||||||||||| ||| ||| ||||||||||||  ||||||||||||||| ||    
T  28627982 caaattacgccataatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtctt 28628081  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctct 197  Q
     ||     || ||||| ||||| ||||||  |||||||  || || ||||||||||| | |||||||| || ||||||    
T  28628082 cct-----ctacctcttgtgatttgactatcctccatcggatctactctccttactacataatctacaggttttctct 28628154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 42177091 - 42177160
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    |||||||||||||||||  |||||||| ||||||||||| |||||||||| |||||  |||| |||||||    
T  42177091 atataccatatttttatgaaactcatttatctctagatctttcttaatagattctcttataggttttcta 42177160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 29653619 - 29653687
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttct 112  Q
    ||||| ||||||| |||  |||||||||||||||||||| ||||||||||||||||  | |||||||||    
T  29653619 atatatcatatttctatctaactcattaatctctagatctttcttaatagtttctcttacagtttttct 29653687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 6420642 - 6420713
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||||||   | ||||| || || ||||||||||| || |||||||||||||||||||    
T  6420642 ctgcctctagtgatctgactatcattcatctgatctactctccttactacagtatctacaagtcttctctct 6420713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 22174224 - 22174129
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    |||| ||| ||||| | ||||||||||| |||  || ||||||||||||||||| || || ||||||||||  |||||||||||| ||||| ||||    
T  22174224 ccataatgttctatcacataccatatttctatctaattcattaatctctagatctttgtttatagtttctcttatagtttttctacgttttcctct 22174129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 28858260 - 28858185
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttcta 113  Q
    ||||| |||||  |||||| ||| ||||| ||||||||||||||| ||||||||||||| ||  ||||||||||||    
T  28858260 tctatcatataaaatatttctatccaacttattaatctctagatctttcttaatagtttgtcttatagtttttcta 28858185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 47848804 - 47848734
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctc 198  Q
    ||||||||||||||| |||||  |||||||| || || |||||||| || ||||| |||||||||||||||    
T  47848804 ctgcctctagtgatcagactatcctccatctgatctactctccttagtacagaatttacaagtcttctctc 47848734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 18605226 - 18605291
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||| || |||| ||||||| ||||||||||||   ||||||||||||||    
T  18605226 atatttttcttcaactcatttatttctaaatccttcataatagtttctcttgtagtttttctaggt 18605291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 30814771 - 30814843
Alignment:
Q  71 aatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgacta 148  Q
    |||||||||||| ||||||||||||||||  ||||| ||||||||| || ||     |||||||||||||||||||||    
T  30814771 aatctctagatctttcttaatagtttctcttatagtgtttctaggtcttcct-----ctgcctctagtgatctgacta 30814843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 38135304 - 38135431
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaat 161  Q
    ||||||||||||||||| ||| || |||||||||||||  ||| ||||||||||| ||  |     ||||||||| |||||||||||  |||||||| ||    
T  38135304 caactcattaatctctaaatcttttttaatagtttctcttatactttttctaggtcttcat-----ctgcctctaatgatctgactatcctccatctgat 38135398  T
Q  162 ttattctccttactaaagaatctacaagtcttct 195  Q
     || ||||||||||| | |||||||  |||||||    
T  38135399 cta-tctccttactacaaaatctactggtcttct 38135431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 41461290 - 41461196
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatct 158  Q
    ||||||||||||| ||||||| || |||||||||||||  ||||||||| | |||  | ||| |  |||||||||||||| |||||||||| |||||    
T  41461290 caactcattaatcactagatctttattaatagtttctcttatagtttttttgggtcgtcctcct--ctgcctctagtgatttgactactcttcatct 41461196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 30200031 - 30200083
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaa 90  Q
    ||||| ||||||||||||| |||  |||||||||||||||||||| |||||||    
T  30200031 tctatcatataccatatttatatcaaactcattaatctctagatctttcttaa 30200083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 30664759 - 30664723
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttct 98  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30664759 caactcattaatctctagatctttcttaatagtttct 30664723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 34745952 - 34745884
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||| | ||||||||| |||| |||||||||| ||||||||||||  || ||||||||||||    
T  34745952 accatgtttttctccaactcatttatctttagatccttcctaatagtttctcttatggtttttctaggt 34745884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 43282036 - 43281968
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||| || ||||||||||||||||||||| | |||||| |||||||  |  ||||||||||||    
T  43282036 accatattttgatccaactcattaatctctagatcttacttaattgtttctcttacggtttttctaggt 43281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 19262586 - 19262656
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||| ||||||| |||||||| || || ||| ||||||| | |||||||| |||||||||||    
T  19262586 ctgcctctagtgatttgactacactccatctgatctactcttcttactaca-aatctacaggtcttctctct 19262656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 37976459 - 37976372
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||| ||| ||||| ||| |||||||||  || ||||||||||||||||| ||| ||| || ||||||| |  |||||||||||||||    
T  37976459 ccataatgttctatcataaaccatatttggatccaactcattaatctctaaatctttcatattagtttcacttatagtttttctaggt 37976372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 43282624 - 43282467
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||| |||||||||  || ||||||| ||| ||| ||| | | ||||||||||||||  |||||||||||||||  | ||||   |   |||| |    
T  43282624 tctataataaaccatatttcgatccaactcaataacctcaagaacttacttaatagtttctcttatagtttttctaggtcatcctctacac---ctcttg 43282528  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||  ||||||||| | || ||||||| ||| ||||||| ||||||||||||||    
T  43282527 tgatctgactatcctccatcta-tctactctccttcctacagaatctgcaagtcttctctct 43282467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 19119516 - 19119562
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    |||||||| |||||||||||| |||| |||||||||| |||||||||    
T  19119516 aactcattgatctctagatccatcttgatagtttctctaatagtttt 19119562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 19262516 - 19262586
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||| ||||| ||||| |||||   ||| |||||||||||||||||||| ||||| |||||||||||    
T  19262516 ccataatgttctatcatatatcatatccctatccaactcattaatctctagatgcttctaaatagtttctc 19262586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 33103141 - 33103059
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggttttt 120  Q
    ||||| ||| ||||||||   ||||||||||||||||||||  || |||  |||| ||||||  |||||||||||||||||||    
T  33103141 tctatcataaaccatattccgattcaactcattaatctctaagtctttcaaaataatttctcgtatagtttttctaggttttt 33103059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 14593942 - 14593897
Alignment:
Q  71 aatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| | |||||||||||||||||  |||||||||||||||    
T  14593942 aatctctaggttcttcttaatagtttctcttatagtttttctaggt 14593897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 16013465 - 16013420
Alignment:
Q  71 aatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| | |||||||||||||||||  |||||||||||||||    
T  16013465 aatctctaggttcttcttaatagtttctcttatagtttttctaggt 16013420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 18637764 - 18637699
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||| || |||| ||||||| ||||||||||||   || |||||||||||    
T  18637764 atatttttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggt 18637699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 18651198 - 18651133
Alignment:
Q  51 atatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||| ||||||||||| || |||| ||||||| ||||||||||||   || |||||||||||    
T  18651198 atatttttcttcaactcatttatttctaaatccttcataatagtttctcttgtattttttctaggt 18651133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 30914593 - 30914630
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  30914593 caactcattaatctctagatccttcatgatagtttctc 30914630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 34341531 - 34341596
Alignment:
Q  128 ctgcctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtctt 193  Q
    ||||||||||| |||||||||  ||||||||||| |  | ||||||||| | ||||||||||||||    
T  34341531 ctgcctctagtaatctgactatcctccatctaatcttctttccttactacaaaatctacaagtctt 34341596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 35922456 - 35922407
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||  |||||||||||||| ||||| ||| ||||||||||||||||    
T  35922456 catatttagattcaactcattaacctctaaatctttcttaatagtttctc 35922407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 40139027 - 40139076
Alignment:
Q  50 catatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||| |||  ||| |||||||||||||||| ||||||||||||||||    
T  40139027 catatttctatcaaacgcattaatctctagatctttcttaatagtttctc 40139076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 44401217 - 44401270
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| |||||||||| ||| ||||||||||||||||  ||| |||||||||||    
T  44401217 aactcgttaatctctaaatctttcttaatagtttctcttataatttttctaggt 44401270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 48202892 - 48202925
Alignment:
Q  166 tctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| ||||||||||||||||||||||    
T  48202892 tctccttactacagaatctacaagtcttctctct 48202925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 41483717 - 41483641
Alignment:
Q  23 atgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||| | | ||||  ||||| ||||| | ||| |||||| ||||| |||||||| ||||||||||||||||    
T  41483717 atgacaccataaagttctaccatatatcatatctatatccaactcgttaatttctagatctttcttaatagtttctc 41483641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 47604081 - 47604029
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaa 90  Q
    ||||||||||||||||||| | |  ||||||||||| |||||||| |||||||    
T  47604081 tctattatataccatatttctctcaaactcattaatatctagatctttcttaa 47604029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 10617325 - 10617382
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  10617325 caactcattaatctctagatccttcttaatggtttctcttatagtttttctaggtttt 10617382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 21870158 - 21870288
Alignment:
Q  63 aactcattaatctctagatccttcttaatagtttctccaatagttttt--ctaggtttttctcttgcctgcctctagtgatctgactactctccatctaa 160  Q
    |||||||||||||||||||||||   |||||||||||  |||||||||  |||||| || ||||     |||| ||||||| |||||||||||||||| |    
T  21870158 aactcattaatctctagatcctt---aatagtttctcagatagtttttttctaggtcttcctct-----gcctttagtgatttgactactctccatctta 21870249  T
Q  161 tttattctccttactaaagaatctacaagtcttctctct 199  Q
    | || ||||||||||| | |||||||| |||||||||||    
T  21870250 tctactctccttactacaaaatctacaggtcttctctct 21870288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 579623 - 579477
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgact 147  Q
    |||||||||| |||||| ||| |||| |||| ||| ||||||||||||||||  | |||||||  |||| |||||     ||||||||||||||| ||||    
T  579623 accatattttgattcaagtcactaatttctatatctttcttaatagtttctcttacagttttttgaggtctttct-----ctgcctctagtgatcagact 579529  T
Q  148 actctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |  |||||||| ||  | ||||||||||| | |||||||||| |||||||||    
T  579528 atcctccatctgatcaactctccttactatataatctacaagccttctctct 579477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 34554 - 34650
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| || |||| ||| ||||| ||| |||||||||  || |||||||||||||| |||||| |||||||| |||||||  |||||||||||||||    
T  34554 caaattacgccataatgttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggt 34650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 1747714 - 1747786
Alignment:
Q  44 atataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||  ||||||||  || ||||||||||||    
T  1747714 atatatcatatctttatccaactcattaatctctagatccttcttaccagtttctcttatggtttttctaggt 1747786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 38954 - 38900
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||    
T  38954 caactcatttatctctagatccttcctaatagtttctcttatagtttttctaggt 38900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 31831950 - 31832012
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctct 124  Q
    ||||||| ||||||||||||| ||||||||||||||||  |||||||||||||| ||| ||||    
T  31831950 caactcagtaatctctagatctttcttaatagtttctctgatagtttttctaggctttcctct 31832012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 1681612 - 1681649
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctc 99  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1681612 caactcattaatctctagatccttcttaatagtttctc 1681649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 1748012 - 1748083
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttt 109  Q
    ||||| |||||| |||||| ||| ||||||||||||||||| ||  |||||| ||||||||| |||||||||    
T  1748012 tctatcatatactatatttctatccaactcattaatctctaaatttttcttagtagtttctctaatagtttt 1748083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 2079462 - 2079399
Alignment:
Q  136 agtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| |  |||||||||||||| ||||||||||| | ||||||||| ||||||||||    
T  2079462 agtgatctgaccagcctccatctaatttactctccttactacataatctacaaatcttctctct 2079399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 33997593 - 33997727
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttt 119  Q
    |||||||| |||| ||| || || || |||||||||| ||| ||||||||||||||||||    ||||||||||||||||  |||||||| | |||| ||    
T  33997593 caaatgacgccataatgttcaatcatgtaccatatttctatccaactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtctt 33997692  T
Q  120 tctcttgcctgcctctagtgatctgactactctccatcta 159  Q
     ||     |||||||||||| | ||||||| |||||||||    
T  33997693 cct-----ctgcctctagtgttttgactaccctccatcta 33997727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 32913417 - 32913485
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||| ||||||| ||||||||||| || ||||||| ||| | ||||||||| |||| |||||    
T  32913417 cctctagtgatttgactaccctccatctaatatactctccttgctacataatctacaactcttttctct 32913485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 14389324 - 14389391
Alignment:
Q  132 ctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    |||||||||||||||||  |||||||| || |||||||||||||| | | |||| | |||||||||||    
T  14389324 ctctagtgatctgactatcctccatctgatctattctccttactacaaagtctataggtcttctctct 14389391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 26291982 - 26291931
Alignment:
Q  48 accatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||    
T  26291982 accatatttttattcaactcatgaatctctaaatctttcataataatttctc 26291931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 31818746 - 31818591
Alignment:
Q  38 tctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctag 137  Q
    ||||| ||| |||||| ||| || ||||||||||||||| | | | ||| ||||||||||||  |||||||||||||| | ||||    ||| ||| |||    
T  31818746 tctatcataaaccatactttgatccaactcattaatctccaaacctttcctaatagtttctcttatagtttttctagg-tcttct----cctacctttag 31818652  T
Q  138 tgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctc 198  Q
    |||||| ||||| |||||| | || || | ||||||||  |||||| ||| ||||||||||    
T  31818651 tgatctcactaccctccatatgatctactttccttactgcagaatcaacaggtcttctctc 31818591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 43102 - 43180
Alignment:
Q  21 aaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||||||| ||  ||||| ||| || ||||||| || |||||||||| |||||||||| || |||||||||||||    
T  43102 aaattacaccataatactctatcataaactatattttgatccaactcattactctctagatctttattaatagtttctc 43180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 6293450 - 6293519
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttct 98  Q
    |||| ||| ||||| ||||||||||||| |||  ||||||||||| |||||||  ||| |||||||||||    
T  6293450 ccataatgctctatcatataccatatttctatctaactcattaatatctagatatttcctaatagtttct 6293519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 35199681 - 35199749
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttct 98  Q
    |||| ||| ||||| |||||| |||||| |||  |||||||||||||||||||| ||| |||||||||||    
T  35199681 ccataatgttctatcatatac-atatttctatctaactcattaatctctagatctttcctaatagtttct 35199749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 5096067 - 5095971
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| || |||| ||| ||||| ||| |||||||||| || ||||||||||| | ||| ||| ||| ||| ||||||||   ||||||||||||||    
T  5096067 caaattacgccataatgttctatcataaaccatattttgatccaactcattaaccactaaatctttcctaagagtttctcttctagtttttctaggt 5095971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 6906982 - 6907050
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||| ||||| ||||||| || ||||| || || ||||||||||| | |||||||| |||||||||||    
T  6906982 cctctcgtgatttgactaccctgcatctgatctactctccttactacaaaatctacatgtcttctctct 6907050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 9593765 - 9593853
Alignment:
Q  28 accattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||| ||| ||||| ||| ||||||||   || |||||||||||||||||  || ||| ||||||||||||  ||| |||||||||||    
T  9593765 accataatgttctatcataaaccatattgggatccaactcattaatctctaagtctttcctaatagtttctcttataatttttctaggt 9593853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 28085609 - 28085513
Alignment:
Q  20 caaatgacaccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    |||||||||||||  || ||||| ||| |||| ||||  || ||||||||| | ||||| ||||||  |||| ||||||| ||||||||| ||||||    
T  28085609 caaatgacaccatagtgttctatcatacaccaaatttggatccaactcattgacctctaaatcctttctaatggtttctctaatagttttcctaggt 28085513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 11986 - 11936
Alignment:
Q  64 actcattaatctctagatccttcttaatagtttctccaatagtttttctag 114  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  11986 actcattaatctctagatccttcttaatagtttctcttatagtttttctag 11936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 2359 - 2429
Alignment:
Q  29 ccattatgatctattatataccatatttttattcaactcattaatctctagatccttcttaatagtttctc 99  Q
    |||| ||| ||||||||||| ||||||| |||  |||||||||||||||||||| ||||||||||| ||||    
T  2359 ccataatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagtctctc 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 178511 - 178565
Alignment:
Q  62 caactcattaatctctagatccttcttaatagtttctccaatagtttttctaggt 116  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||    
T  178511 caactcattaatctctatatctttcttaatagtttctcttatagtttttctaggt 178565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 44023 - 44091
Alignment:
Q  131 cctctagtgatctgactactctccatctaatttattctccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||||||||||||  ||||||||| | || ||||||||||| |||||||  | |||||||||||    
T  44023 cctctagtgatctgactatcctccatctagtctactctccttactagagaatctgaaggtcttctctct 44091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 346870 - 346996
Alignment:
Q  68 attaatctctagatccttcttaatagtttctccaatagtttttctaggtttttctcttgcctgcctctagtgatctgactactctccatctaatttattc 167  Q
    ||||||||||||||| || |||||||||| ||   |||||||||||| | |||||     ||||| |||| |||||| |||| |||||||| ||  | ||    
T  346870 attaatctctagatcttttttaatagtttatcttgtagtttttctagatctttct-----ctgcccctagcgatctgcctaccctccatctgatcaactc 346964  T
Q  168 tccttactaaagaatctacaagtcttctctct 199  Q
    ||||||||| |||||||| | || ||||||||    
T  346965 tccttactacagaatctataggttttctctct 346996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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