View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_52 (Length: 215)
Name: NF20107_low_52
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 35343722 - 35343899
Alignment:
| Q |
20 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
119 |
Q |
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| T |
35343722 |
ataagcccaaaactatagacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
35343821 |
T |
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| Q |
120 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattct |
197 |
Q |
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| T |
35343822 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattct |
35343899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 35362234 - 35362057
Alignment:
| Q |
20 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35362234 |
ataagcccaaaactatagacatcaacctttctcccataggattttctcttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
35362135 |
T |
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| Q |
120 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattct |
197 |
Q |
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| T |
35362134 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcatcattaataaggacattct |
35362057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 35355586 - 35355409
Alignment:
| Q |
20 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
35355586 |
ataagcccaaaactatagacatcaacctttctcccataggactttcgtctgatcatttcaggtgccatccaacggtaagtaccagggtcatcagcaagta |
35355487 |
T |
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| Q |
120 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattct |
197 |
Q |
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| T |
35355486 |
agtcgcagtatgcttcctcacaggcaatgccaaaatcagcaattttaagatgagagtccccattaatgagaacattct |
35355409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 3820353 - 3820176
Alignment:
| Q |
20 |
ataagcccaaaactatagacatcaacctttctcccataggattttcttttgatcatctcaggtgccatccaacggtaggtaccaaggtcgtcagcaagta |
119 |
Q |
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|||||||||||||| || || ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||| | || || || | || |
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| T |
3820353 |
ataagcccaaaactgtacacgtcaacctttctcccatatgatttccgtttgatcatttcaggtgccatccaacggtaggtgccaggatcatctgccaata |
3820254 |
T |
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| Q |
120 |
actcgcagtgtgcttcctcacaagcaatgccaaaatcagcaattttaaggtgaaagtcaccattaataaggacattct |
197 |
Q |
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| || || ||| ||||||||||||||||| |||||||||| ||||||| ||||||| ||| ||| |||||||||| |
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| T |
3820253 |
agtcacatactgcctcctcacaagcaatgccgaaatcagcaagtttaaggcgaaagtcttcatcaatgaggacattct |
3820176 |
T |
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