View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_6 (Length: 563)
Name: NF20107_low_6
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 4008217 - 4008756
Alignment:
| Q |
13 |
attattctattgacaaagactgaaaagcacgctaatattgaaaatgattagaataggtcatcttaatatatgctttgtttgttacagatctttcccccac |
112 |
Q |
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| T |
4008217 |
attattctattgacaaagactgaaaagcacgctaatattgaaaatgattagagaaggtcatcttaatatatgctttatttgttacagatctttcccccac |
4008316 |
T |
|
| Q |
113 |
ccatcacaactgagtgatgagttctacacaggatgaagacgaccctttgttcctgttttcttttctcaatcgtcgtttctatccagttatctaagtacac |
212 |
Q |
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| T |
4008317 |
ccatcacaactgagtgatgagttctacacaggatgaagacagccctttgttcctgtttgcttttctcaatcgtcgtttctatccagttatctaagtacac |
4008416 |
T |
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| Q |
213 |
acgtaaataatctaaaagcaaacctattaacaattgcattaaaagagaagtggcaaataataatgtcaatgtttcaatctttgattattaacaaggcatt |
312 |
Q |
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| T |
4008417 |
acgtaaataatctaaaagcaaacctattaacaattgcattaaaaaagaagtggcaaataataatgtcaatgtttcaatctttgattattaacaaggcatt |
4008516 |
T |
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| Q |
313 |
tagtcctaagtagctaacttcttgcctgctgtaagaagagtgggttccaaagaaatgctattcattcatagataaaccactttaaatattccccctaccg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4008517 |
tagtcctaagtagctaacttcttgcctgctgtaagagaagtgggttccaaagaaatgctattcattcatagataaaccactttaaatattccccctaccg |
4008616 |
T |
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| Q |
413 |
gtattcacttgaagataatgact-aaagtatttttattcatgtattggttttgattcagtctcccattttgtgaattcacccacacacattgcctagtgg |
511 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4008617 |
gtattcacttgaagataatgactaaaagtatttttattcatgtattggttttgattcagtctcccattttgtgaattcacccacatacattgcctagtgg |
4008716 |
T |
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| Q |
512 |
ttaggactgcggtaactttgctttcacatatcatttatgt |
551 |
Q |
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| T |
4008717 |
ttaggactgcggtaactttgctttcacagatcatttatgt |
4008756 |
T |
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