View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20107_low_8 (Length: 500)
Name: NF20107_low_8
Description: NF20107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20107_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Original strand, 45128300 - 45128757
Alignment:
| Q |
13 |
aaaattacaagttaatttagcttagtgagaagcaccaaggttttaaaaacagatccagggacaactatttgggctgtgacatcaaggttttgatgtcttg |
112 |
Q |
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| T |
45128300 |
aaaattacaagttattttagcttagtgagaagcaccaaggttttaaaaacagatccacggacaactattcgggctgtgaaatcaaggttttgatgtcttg |
45128399 |
T |
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| Q |
113 |
gcgacctcaaatgaggccacataaaccacatttaactttgattctaagaaattagagaatgcgaccgcaagcagtttaaaaccttgagaatgacttactt |
212 |
Q |
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| T |
45128400 |
gcgacctcaaatgaggccac---------atttaactttgattctaagaaattagagaatgcgaccgcaagcagtttaaaaccttgagaatgacttactt |
45128490 |
T |
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| Q |
213 |
gctgcagacatcccacttgcgaactccaacgagctttgcatgaagtgcctcttgcacatctctcctgtttaagtagtttgtaaccttgtcatccacacat |
312 |
Q |
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| T |
45128491 |
gctgcagacatcccacttgcgaactccaacgagctttgcatgaagtgcctcttgcacatctctcctgtttaagtagtttgtaaccttgtcatccacacat |
45128590 |
T |
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| Q |
313 |
acatctatcatttcatttgcttgctacaaggacacaacaaaacaatctaagtgaattagctaaacttgaaagctaacacgtgttgatgtcgatgtctaac |
412 |
Q |
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| T |
45128591 |
acatctatcatttcatttgcttgctacaaggacacaacaaaacaatctaagtgaattagctaaacttgaaagctaacacgtgttgatgtcgatgtctaac |
45128690 |
T |
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| Q |
413 |
atcgacagacacaagtgattacattcaattctgtcaaattattattgttggtatcgacgtgtgtcgttgt |
482 |
Q |
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| T |
45128691 |
atcaacagacacaagtgattacattcaattctgtcaaattatta---ttggtatcgacgtgtgtcattgt |
45128757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 337
Target Start/End: Original strand, 40280436 - 40280565
Alignment:
| Q |
208 |
tacttgctgcagacatcccacttgcgaactccaacgagctttgcatgaagtgcctcttgcacatctctcctgtttaagtagtttgtaaccttgtcatcca |
307 |
Q |
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|||||||||||||||| |||||| ||||||||| |||| ||||| || |||| ||| ||||| | ||||||||||| |||||||| | |||||| | |
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| T |
40280436 |
tacttgctgcagacattccactttggaactccaataagctcggcatggagcgccttttgtacatcgcgtctgtttaagtaatttgtaacttcgtcatcta |
40280535 |
T |
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| Q |
308 |
cacatacatctatcatttcatttgcttgct |
337 |
Q |
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| T |
40280536 |
cacatacatctatactctcatttgcatgct |
40280565 |
T |
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