View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_13 (Length: 285)
Name: NF20108_high_13
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 11930550 - 11930814
Alignment:
| Q |
15 |
tcataagtgatcatataacaattctttcatatatatttttctccctcatgacttttggtacagcattccccctagactataactaacaacaatatgtgac |
114 |
Q |
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| T |
11930550 |
tcataagtgatcatataacaattctttcatatatatttttctccctcatgacttttggtacagcattccccctagactataactaacaacaatatgtgac |
11930649 |
T |
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| Q |
115 |
aaagatccgtgtatgaatgcttaatttgacatgaattggagtatgaccagacgcacacatgtgtaaagtgtgnnnnnnnnnnnnnnnnnnnncttatgtt |
214 |
Q |
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| T |
11930650 |
aaagatccatgtatgaatgcttaatttgacatgaattggagtatgaccaaacgcacacatgtgtaaagtgtgttttttttccttctttttttcttatgtt |
11930749 |
T |
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| Q |
215 |
tgatgcacgagttttgtagagtttcatacatatagtatgaaattgactatattatttcttctcac |
279 |
Q |
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| T |
11930750 |
tgatgcacgagttttgtagagtttcatacatatagtatgaaattgactatattatttcttgtcac |
11930814 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 30694361 - 30694415
Alignment:
| Q |
216 |
gatgcacgagttttgtagagtttcatacatatagtatgaaattgactatattatt |
270 |
Q |
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| T |
30694361 |
gatgcacgggttttgtagagtttcatatataaaatatcaaattggctatattatt |
30694415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 10024009 - 10024053
Alignment:
| Q |
225 |
gttttgtagagtttcatacatatagtatgaaattgactatattatt |
270 |
Q |
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| T |
10024009 |
gttttgtagagtttcatatata-actatgaaattgactatattatt |
10024053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 37381895 - 37381851
Alignment:
| Q |
226 |
ttttgtagagtttcatacatatagtatgaaattgactatattatt |
270 |
Q |
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||||||||||||||||| ||| | ||| ||||||||||||||||| |
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| T |
37381895 |
ttttgtagagtttcatatataaaatatcaaattgactatattatt |
37381851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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