View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_16 (Length: 267)
Name: NF20108_high_16
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 42677033 - 42677281
Alignment:
| Q |
1 |
gaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattttttccatttgagcatggtgctgattttttgtcgttggaa |
100 |
Q |
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| T |
42677033 |
gaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattctatccatttgagcatggtgctgattttttgtcgttggaa |
42677132 |
T |
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| Q |
101 |
gctggtcctagccgcaaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatggcggaagcttatt |
200 |
Q |
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| T |
42677133 |
gctggtcctagtcgcaaaccattggagaatacttcccatgttttgtatattggtttgattccacatggcttctaagagatggagatggcgaaagcttatt |
42677232 |
T |
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| Q |
201 |
ttggacaatttggaaccatcaagagattgagaatttccaccagaaaatc |
249 |
Q |
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| T |
42677233 |
ttggacaatttggaaccatcaagagattgagaatttccaccagaaaatc |
42677281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 52834967 - 52835009
Alignment:
| Q |
193 |
agcttattttggacaatttggaaccatcaagagattgagaatt |
235 |
Q |
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| T |
52834967 |
agcttattttggacaattcggtaccgtcaagagattgagaatt |
52835009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 48969581 - 48969535
Alignment:
| Q |
193 |
agcttattttggacaatttggaaccatcaagagattgagaatttcca |
239 |
Q |
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| T |
48969581 |
agcttattttggacaatttggaaccatcaagagattgagaatttcca |
48969535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 48969784 - 48969712
Alignment:
| Q |
116 |
aaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatgg |
188 |
Q |
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|||| |||||||||| |||||| ||||||||||||||| |||||||||||||||| | |||| |||||||| |
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| T |
48969784 |
aaacaattggagaattcttcccctgttttgtatattggtcggattccacatggcttctatgagaaggagatgg |
48969712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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