View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_17 (Length: 267)
Name: NF20108_high_17
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 44531701 - 44531466
Alignment:
| Q |
15 |
gattattctatgacacaaggtattttaggtagtgaaacattcacttttggtgatgatnnnnnnnnccaagtttcagttaaaaacattggttttggttgtg |
114 |
Q |
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| T |
44531701 |
gattattctatgacacaaggtattttaggtagtgaaacattcacttttggtgatgataaaaaaaaccaagtttcagttaaaaacattggttttggttgtg |
44531602 |
T |
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| Q |
115 |
gtgaagacaatgaaggaaaagggtttgaacaagcttcagggttggttggattaggacgtggacctttatctttggtttctcaattaaaagaacaaaaatt |
214 |
Q |
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| T |
44531601 |
gtgaagacaatgaaggaaaagggtttgaacaagcttcagggttggttggattaggacgtggtcctttatctttggtttctcaattacaagaacaagaatt |
44531502 |
T |
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| Q |
215 |
ctcttattgtttaacctcaatggatgacacaaaaca |
250 |
Q |
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| T |
44531501 |
ctcttattgtttaacctcaatggatgacacaaaaca |
44531466 |
T |
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