View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20108_high_19 (Length: 262)

Name: NF20108_high_19
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20108_high_19
NF20108_high_19
[»] chr4 (2 HSPs)
chr4 (16-246)||(24908261-24908495)
chr4 (16-121)||(43179511-43179617)
[»] chr5 (2 HSPs)
chr5 (16-164)||(15468916-15469062)
chr5 (16-80)||(1779423-1779487)
[»] chr3 (3 HSPs)
chr3 (58-164)||(8535408-8535514)
chr3 (20-115)||(1701058-1701153)
chr3 (16-92)||(18966317-18966393)
[»] chr2 (1 HSPs)
chr2 (12-109)||(34576802-34576899)
[»] chr8 (1 HSPs)
chr8 (38-138)||(12895360-12895460)
[»] chr1 (2 HSPs)
chr1 (16-80)||(8933755-8933819)
chr1 (16-85)||(18353719-18353788)
[»] chr7 (1 HSPs)
chr7 (16-80)||(42678776-42678840)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24908261 - 24908495
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttatttagtagtgcgtctagaagcttccataata 115  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24908261 atactttagttcatatgactaaaaagacctagaaaagttactattttcctaatgctttaatttatcttatttagtagtgcgtctagaagcttccataata 24908360  T
Q  116 ttctttaatattctctatatctagaaacctccatattattcttcatcatcttgtgtctcaatctc-aaggc---taaacttgtataagactgatatgtct 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||| ||||||||||||    
T  24908361 ttctttaatattctctatatctagaaacctccatattattcttcatcatcttgtgtctcaatctcaaaggctaataaacttgtataaaactgatatgtct 24908460  T
Q  212 gataatatttcccatcacattcccattgtgcatat 246  Q
    |||||||||| ||||||||||||||||||||||||    
T  24908461 gataatattttccatcacattcccattgtgcatat 24908495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 43179617 - 43179511
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgcttta-ttttatcttatttagtagtgcgtctagaagcttccataat 114  Q
    |||||||||||||||||||||||| || | | ||||||||  ||||   |||||||| | |||||| ||||||||||| | |||||| ||||||| || |    
T  43179617 atactctagttcatatgactagaaggatccaaaaaagttaagatttctttaatgcttaatttttattttatttagtagagtgtctagtagcttccttatt 43179518  T
Q  115 attcttt 121  Q
    |||||||    
T  43179517 attcttt 43179511  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 15469062 - 15468916
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttatttagtagtgcgtctagaagcttccataata 115  Q
    |||| ||| ||||||||||||||  || |||||||||||| |||||||||| ||||||||||||||||||||||||||  ||||| |||||||| ||||     
T  15469062 atacactaattcatatgactagatggatctagaaaagttaatattttcctagtgctttattttatcttatttagtagt--gtctataagcttccttaatg 15468965  T
Q  116 ttctttaatattctctatatctagaaacctccatattattcttcatcat 164  Q
    ||||||| |||||||||| |||||| || | ||||| ||||||||||||    
T  15468964 ttctttagtattctctatgtctagagactttcatatgattcttcatcat 15468916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 1779423 - 1779487
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttat 80  Q
    |||||||||||||||||||||||| || |||||||  |||  ||||| ||| |||||||||||||    
T  1779423 atactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttat 1779487  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 8535514 - 8535408
Alignment:
Q  58 attttcctaatgctttattttatcttatttagtagtgcgtctagaagcttccataatattctttaatattctctatatctagaaacctccatattattct 157  Q
    ||||| ||| ||||||||||||||||||||||||| | ||||||||||||| |||| |||||||| |||||| |||||||| |||| |||||||||| ||    
T  8535514 atttttctagtgctttattttatcttatttagtagagtgtctagaagcttcaataaaattctttagtattctatatatctaaaaacttccatattatact 8535415  T
Q  158 tcatcat 164  Q
    |||||||    
T  8535414 tcatcat 8535408  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 1701153 - 1701058
Alignment:
Q  20 tctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttatttagtagtgcgtctagaagcttccataata 115  Q
    |||| ||||||||||||||| || ||||||||||||  |||| |||| || || ||||||||||||||||||  | |||||||||||||| |||||    
T  1701153 tctaattcatatgactagaaggatctagaaaagttaagatttccctagtgtttaattttatcttatttagtacagtgtctagaagcttccttaata 1701058  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 18966317 - 18966393
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttatttagtag 92  Q
    |||||||||| | ||||||||||| || |||||||  |||  ||||||||| ||||| ||||||| | |||||||||    
T  18966317 atactctagtacgtatgactagaaggatctagaaacattaagattttcctagtgcttaattttatttcatttagtag 18966393  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 34576802 - 34576899
Alignment:
Q  12 atgaatactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttatttagtagtgcgtctagaagcttcc 109  Q
    |||||||||||||||||||||||||||| || ||||||||||||  ||||  ||| ||| | ||||||| ||||||||||| | ||| || |||||||    
T  34576802 atgaatactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagtagcttcc 34576899  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 12895460 - 12895360
Alignment:
Q  38 aaagacctagaaaagttactattttcctaatgctttattttatcttatttagtagtgcgtctagaagcttccataatattctttaatattctctatatct 137  Q
    ||||| |||||||||||   ||||  ||||||||| |||||| |||||||||||| | ||||||||| || | |||||||||||  ||||||||||||||    
T  12895460 aaagatctagaaaagtttagatttctctaatgcttaattttaacttatttagtagagtgtctagaagttttcttaatattctttcgtattctctatatct 12895361  T
Q  138 a 138  Q
    |    
T  12895360 a 12895360  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 8933755 - 8933819
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttat 80  Q
    |||||||||||||||||||||||| || |||||||  |||  ||||||||| |||||||||||||    
T  8933755 atactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttat 8933819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 18353788 - 18353719
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttatcttat 85  Q
    |||||||||||||||||||||||| || ||||||||| ||  ||||||||| ||||  ||||||| ||||    
T  18353788 atactctagttcatatgactagaaggatctagaaaagataagattttcctagtgctcaattttattttat 18353719  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 42678776 - 42678840
Alignment:
Q  16 atactctagttcatatgactagaaagacctagaaaagttactattttcctaatgctttattttat 80  Q
    ||||||||| |||||||||||||| || |||||||  |||  ||||||||| |||||||||||||    
T  42678776 atactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttat 42678840  T

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