View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_23 (Length: 207)
Name: NF20108_high_23
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 32940494 - 32940322
Alignment:
| Q |
16 |
agacgacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcat |
115 |
Q |
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| T |
32940494 |
agacgacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcat |
32940395 |
T |
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| Q |
116 |
caagaagagtagaaatgtgatgagtttaattagaaactccatgcttgttgtaggaagagatagtgggaaggga |
188 |
Q |
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| T |
32940394 |
caagaagagtagaaatgtgatgagtttaattagaaactccatgcttgttgtaggaagagatagtgggaaggga |
32940322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 32921778 - 32921676
Alignment:
| Q |
41 |
ttcttgttttggaaatattttacgattggtgagta---tattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaaatgtgatg |
137 |
Q |
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| T |
32921778 |
ttcttgttttgggaaaatcttacggttagtgagtaatatgttgtttccaagatattgggagtaagaaattgaaggcataatgaagagaagaaatgtgatg |
32921679 |
T |
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| Q |
138 |
agt |
140 |
Q |
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||| |
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| T |
32921678 |
agt |
32921676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 32932262 - 32932121
Alignment:
| Q |
20 |
gacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaag |
119 |
Q |
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| T |
32932262 |
gacagcgtaagatgttaaggtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggcattaac |
32932163 |
T |
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| Q |
120 |
aagagtagaaatgtg---atgagtttaattagaaactccatg |
158 |
Q |
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| T |
32932162 |
aagagtaaaaaagtggtaatgagtgtaattaggaactccatg |
32932121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 32910391 - 32910301
Alignment:
| Q |
39 |
gtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaa |
129 |
Q |
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| T |
32910391 |
gtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa |
32910301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 140
Target Start/End: Complemental strand, 11822300 - 11822196
Alignment:
| Q |
39 |
gtttcttgttttggaaatattttacgattggtgagta---tattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaaatgtga |
135 |
Q |
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| T |
11822300 |
gtttcttgttttgggaaaatcttacggttagtgagtaatatgttgtttccaagattttgggagtaagaaatggaaggcattatgaagagtagaaatgtga |
11822201 |
T |
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| Q |
136 |
tgagt |
140 |
Q |
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||||| |
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| T |
11822200 |
tgagt |
11822196 |
T |
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