View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_3 (Length: 515)
Name: NF20108_high_3
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Complemental strand, 50705839 - 50705347
Alignment:
| Q |
10 |
aagaatatgatatctaaatgtaattgataaagaatagatgataataaccacaaaatatttacttaactcactataactttatttgggcgtttagggaaaa |
109 |
Q |
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||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50705839 |
aagaaaatgatatctaaatgtaattaattaagaatagatgataataaccacaaaatatttacttaactcactataactttatttgggcgtttagggaaaa |
50705740 |
T |
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| Q |
110 |
agaaagggaaggaagggtgagttgtcttcctccttgtatgggattttatttttcttgattggac--taaaatcctccaatatgggaaaactagaaacatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50705739 |
agaaagggaaggaagggtgagttgtcttcctccttgtatgggattttatttttcttcattggactgtaaaatcctccaatatgggaaaactagaaacatg |
50705640 |
T |
|
| Q |
208 |
cattgcaggagggttttggatgattttgaataaatttccaaattcattaattcaatttattatctnnnnnnnnnnnnnnnnnnntactcacaagtactac |
307 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| ||||||| | |
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| T |
50705639 |
cattgcaggaaggttttggatgattttgaatcaatttccaaattcattaattctatttattataatctcaacaacaacaaaaaatactcataagtactcc |
50705540 |
T |
|
| Q |
308 |
cagaaaaagtgagggattctcttatctttcccttcacccccctttcctccaactctta--ccctcctaactgacataatggcaaatggtattacagacgt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
50705539 |
cagaaaaagtgagggattctcttatctttcccttcaccccactttcctccaactcttaccccctcctaactgacataatggcaaatggtattgcagacgt |
50705440 |
T |
|
| Q |
406 |
tattattttacaacaatgacaaaaagaatgaggttgcataactaataaaagacatgccatccactctgccctcttctcacctatattctatac |
498 |
Q |
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| T |
50705439 |
tattattttacaacaatgacaaaaagaatgaggttgcataactaataaaagacatgccatccactctgccctcttctcacctatattctatac |
50705347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 26637461 - 26637358
Alignment:
| Q |
141 |
ccttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaaaactagaaacatgcattgcaggagggttttggatgattttgaataa |
240 |
Q |
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||||| ||| ||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| |||||||| | ||||||||||| ||| | |||||| |
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| T |
26637461 |
ccttgcatgagattttatttttcttcattggactaaaaccctccaatatggg-gaactaaaaagatgcattggggaagggttttggaggatatcgaataa |
26637363 |
T |
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| Q |
241 |
atttc |
245 |
Q |
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||||| |
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| T |
26637362 |
atttc |
26637358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 26629922 - 26629808
Alignment:
| Q |
141 |
ccttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaaaactagaaacatgcattgcaggagggttttggatgattttgaataa |
240 |
Q |
| |
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||||| ||| ||||||||| ||||| |||| ||||||| ||||| ||||||| ||||| ||| |||||||| | ||||||||||| ||| | ||||| |
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| T |
26629922 |
ccttgcatgagattttattgttcttcattgaactaaaaccctcccatatgggggaactaaaaaaatgcattggggaagggttttggaggatatcaaataa |
26629823 |
T |
|
| Q |
241 |
atttccaaattcatta |
256 |
Q |
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|||| ||||||||||| |
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| T |
26629822 |
attt-caaattcatta |
26629808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 33109913 - 33109965
Alignment:
| Q |
142 |
cttgtatgggattttatttttcttgattggactaaaatcctccaatatgggaa |
194 |
Q |
| |
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|||| ||| ||||||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
33109913 |
cttgaatgagattttatttttcttcattggactaaaaccctccaataggggaa |
33109965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 42198141 - 42198098
Alignment:
| Q |
152 |
attttatttttcttgattggactaaaatcctccaatatgggaaa |
195 |
Q |
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| T |
42198141 |
attttgtttttcttcattggactaaaatgctccaatatgggaaa |
42198098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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