View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_high_5 (Length: 395)
Name: NF20108_high_5
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Complemental strand, 22776820 - 22776457
Alignment:
| Q |
14 |
agagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtagatttaagtatacaaatcgtcagggacagagatctgctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22776820 |
agagtgaagacacgtgatgatgaagatttaccagatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctt |
22776721 |
T |
|
| Q |
114 |
taaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtatttatggttgataa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22776720 |
taaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataa |
22776621 |
T |
|
| Q |
214 |
tgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22776620 |
tgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcgtatgctatg |
22776521 |
T |
|
| Q |
314 |
gcttatggtggtggaggatttgctataagctaccctttggctaaggagcttgcaaagatgcagg |
377 |
Q |
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| T |
22776520 |
gcttatggtggtggaggatttgctataagctaccctttggctaaggagcttgcaaagatgcagg |
22776457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 82 - 342
Target Start/End: Complemental strand, 40945366 - 40945106
Alignment:
| Q |
82 |
gtatacaaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagagacattgaaacttgggttggaggatgtgagatggttcatgatg |
181 |
Q |
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|||||||||||| |||||||| || || || || ||||| |||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||| ||||| |
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| T |
40945366 |
gtatacaaatcgacagggacaaaggtcagcattgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatg |
40945267 |
T |
|
| Q |
182 |
ggagatgatgatactgtatttatggttgataatgtggttagagttctttcaaaatatgatcatactcaattttattatgttggaagctcctctgagagtc |
281 |
Q |
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||||||||||||||||| ||| | ||||||||||| |||||| |||||||||| ||||| |||| || |||||||||||||| || || |||||||||| |
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| T |
40945266 |
ggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagttcttctgagagtc |
40945167 |
T |
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| Q |
282 |
atgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctataag |
342 |
Q |
| |
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|||| ||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||| |
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| T |
40945166 |
atgtccagaatattcatttttcatatgctatggcatatggtggtggtggatttgctataag |
40945106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 5180527 - 5180664
Alignment:
| Q |
240 |
atcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctat |
339 |
Q |
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|||||| ||||||||| || || |||| ||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||| ||| |
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| T |
5180527 |
atcataatcaattttactacgtcggaaactcctctgagagtcatgttcaaaacatacatttctcctattctatgacttatggtggtggaggatttgttat |
5180626 |
T |
|
| Q |
340 |
aagctaccctttggctaaggagcttgcaaagatgcagg |
377 |
Q |
| |
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||||| |||||||||||| ||||||||||| ||||||| |
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| T |
5180627 |
aagctgccctttggctaaagagcttgcaaatatgcagg |
5180664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 355
Target Start/End: Original strand, 11092000 - 11092122
Alignment:
| Q |
233 |
aaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggat |
332 |
Q |
| |
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||||||||||||| |||||||||||| |||| || || ||||||||| | ||||| || |||| |||||| |||||||||||||||||| |||| |
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| T |
11092000 |
aaatatgatcataatcaattttattacattggtagtaattcagagagtcatttgcagaatatttatttttcttataatatggcttatggtggtggtggat |
11092099 |
T |
|
| Q |
333 |
ttgctataagctaccctttggct |
355 |
Q |
| |
|
|||||||||| || ||||||||| |
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| T |
11092100 |
ttgctataagttatcctttggct |
11092122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 41319944 - 41319822
Alignment:
| Q |
232 |
aaaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggagga |
331 |
Q |
| |
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|||||| ||||||| |||||||||||| ||||||| | ||||| |||||| | ||||| || || || |||| |||||||||||||||||| ||| |
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| T |
41319944 |
aaaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttgcagaatattttcttttcctatggtatggcttatggtggtggtgga |
41319845 |
T |
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| Q |
332 |
tttgctataagctaccctttggc |
354 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
41319844 |
tttgctataagctatcctttggc |
41319822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 2619329 - 2619393
Alignment:
| Q |
275 |
gagagtcatgttcagaacatacatttctcttatgctatggcttatggtggtggaggatttgctat |
339 |
Q |
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||||||||| | ||||| ||| |||| ||||||| |||||||||||||||||| ||||||||||| |
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| T |
2619329 |
gagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgctat |
2619393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 29613154 - 29613096
Alignment:
| Q |
297 |
atttctcttatgctatggcttatggtggtggaggatttgctataagctaccctttggct |
355 |
Q |
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|||| |||||| |||||||||||||||||| ||||||||||| || || ||||||||| |
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| T |
29613154 |
atttttcttataatatggcttatggtggtggtggatttgctattagttatcctttggct |
29613096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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