View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20108_high_7 (Length: 372)

Name: NF20108_high_7
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20108_high_7
NF20108_high_7
[»] chr4 (1 HSPs)
chr4 (1-354)||(11118707-11119060)
[»] chr5 (9 HSPs)
chr5 (79-351)||(42124146-42124418)
chr5 (243-341)||(34232000-34232098)
chr5 (243-351)||(34239742-34239850)
chr5 (232-279)||(41445148-41445195)
chr5 (235-279)||(41432340-41432384)
chr5 (240-275)||(41571271-41571306)
chr5 (252-351)||(42129694-42129793)
chr5 (250-331)||(41712756-41712837)
chr5 (11-47)||(42124078-42124114)
[»] chr6 (1 HSPs)
chr6 (16-345)||(25522213-25522542)
[»] chr3 (1 HSPs)
chr3 (244-351)||(8523841-8523948)
[»] chr2 (2 HSPs)
chr2 (228-341)||(12249269-12249382)
chr2 (112-263)||(32681314-32681465)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 11118707 - 11119060
Alignment:
Q  1 taaatatttccaagaaaccaattgggcattcttccattaagtttgtttttggaaagatccagatgtgacaaacttggaaattctccttgtaagttgtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118707 taaatatttccaagaaaccaattgggcattcttccattaagtttgtttttggaaagatccagatgtgacaaacttggaaattctccttgtaagttgtgaa 11118806  T
Q  101 attcgatcaagttgacagaagataatttcagtatttgtaggttagtaaaactataagtgacattggattcgaattttagtgacaactgactattccttga 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118807 attcgatcaagttgacagaagataatttgagtatttgtaggttagtaaaactataagtgacattggattcgaattttagtgacaactgactattccttga 11118906  T
Q  201 aagggataaaatttccaggtcagcaaatttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||     
T  11118907 aagggataaaatttccaggtcagcaaatttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatagatctagttcatctagctttgtt 11119006  T
Q  301 aggttgaaaatgcattctggaatatttccttgtagcctgttgttgcttagaact 354  Q
    ||| |||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  11119007 aggctgaaaatgcattctggaatattgccttgtagccggttgttgcttagaact 11119060  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 79 - 351
Target Start/End: Original strand, 42124146 - 42124418
Alignment:
Q  79 aattctccttgtaagttgtgaaattcgatcaagttgacagaagataatttcagtatttgtaggttagtaaaactataagtgacattggattcgaatttta 178  Q
    |||||||||||||| || || |||| |||||| ||||||||||| |||| || || ||||||| ||| |||||||||| ||||||||||||| || ||||    
T  42124146 aattctccttgtaaattatggaatttgatcaaattgacagaagacaattccaatacttgtaggctagaaaaactataattgacattggattcaaaattta 42124245  T
Q  179 gtgacaactgactattccttgaaagggataaaatttccaggtcagcaaatttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatag 278  Q
    | || || |||||||||| |||||||||||| ||||| ||    | || |||||||||||||| ||||||||||| ||||||||||| ||| || |||||    
T  42124246 gagataattgactattccatgaaagggataacatttctagacatgtaagtttggagaagagttgaaaattgacaagaccactcaagtcgttcgaagatag 42124345  T
Q  279 atctagttcatttagatatgtcaggttgaaaatgcattctggaatatttccttgtagcctgttgttgcttaga 351  Q
    |  ||  | |  ||| | ||| |||||||||||| | || |||||||| ||||||||||||||||||||||||    
T  42124346 aattaagtgagatagttttgttaggttgaaaatggactcaggaatattgccttgtagcctgttgttgcttaga 42124418  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 34232098 - 34232000
Alignment:
Q  243 aaaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatatttccttgtagcctgtt 341  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||  || || |   |||||||||||  ||||||||||||| ||||||||| ||||    
T  34232098 aaaattgacaacaccactcaagttgtttgatgatagatctaatacagctaaatttacaaggttgaaaattgattctggaatattgccttgtagcttgtt 34232000  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 34239850 - 34239742
Alignment:
Q  243 aaaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatatttccttgtagcctgttg 342  Q
    |||||||||||||||||||||||||||||||||||||  ||||  | |||| | ||  |||||||||||  | | ||||||||  ||||||||| |||||    
T  34239850 aaaattgacaacaccactcaagttgtttgatgatagacatagtgtaattaggtttgcaaggttgaaaattgaatttggaatatcaccttgtagcttgttg 34239751  T
Q  343 ttgcttaga 351  Q
    |||| ||||    
T  34239750 ttgcataga 34239742  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 41445148 - 41445195
Alignment:
Q  232 gagaagagtttaaaattgacaacaccactcaagttgtttgatgataga 279  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  41445148 gagaagagtttaaaattgacaaaaccactcaagttatttgaagataga 41445195  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 41432340 - 41432384
Alignment:
Q  235 aagagtttaaaattgacaacaccactcaagttgtttgatgataga 279  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  41432340 aagagtttaaaattgacaaaaccactcaagttatttgaagataga 41432384  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 41571306 - 41571271
Alignment:
Q  240 tttaaaattgacaacaccactcaagttgtttgatga 275  Q
    |||||||||||||| |||||||||||||||||||||    
T  41571306 tttaaaattgacaataccactcaagttgtttgatga 41571271  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 351
Target Start/End: Original strand, 42129694 - 42129793
Alignment:
Q  252 aacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatatttccttgtagcctgttgttgcttaga 351  Q
    |||| ||||||||||||||||||||||||||||   | |||  | ||  |||||||||||  ||| ||||||||| ||||||||| |||||  |||||||    
T  42129694 aacatcactcaagttgtttgatgatagatctagcaaagttaagtttgcaaggttgaaaatagattttggaatattgccttgtagcttgttgccgcttaga 42129793  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 41712837 - 41712756
Alignment:
Q  250 acaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatatttcctt 331  Q
    ||||||||||| ||||||||||||||||| ||||||  | |||| | | | || ||||||||  ||||||||||||| ||||    
T  41712837 acaacaccactgaagttgtttgatgataggtctagtctagttaggtttataagtttgaaaattgattctggaatattgcctt 41712756  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 42124078 - 42124114
Alignment:
Q  11 caagaaaccaattgggcattcttccattaagtttgtt 47  Q
    |||| |||||||||||||||||||||| |||||||||    
T  42124078 caagtaaccaattgggcattcttccatgaagtttgtt 42124114  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 345
Target Start/End: Complemental strand, 25522542 - 25522213
Alignment:
Q  16 aaccaattgggcattcttccattaagtttgtttttggaaagatccagatgtgacaaacttggaaattctccttgtaagttgtgaaattcgatcaagttga 115  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||    |||| | || |||| |||||| || ||| |||||| |||||| || |    
T  25522542 aaccaattgggcattcttccatcaagtttgttattggaaagatcaagataatccaaattcgggaattttccttgcaatttgggaaatttgatcaaattta 25522443  T
Q  116 cagaagataatttcagtatttgtaggttagtaaaactataagtgacattggattcgaattttagtgacaactgactattccttgaaagggataaaatttc 215  Q
    | ||||| | || || |   |  |||| |  || ||||| | |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| |      
T  25522442 cggaagacagttccaattcgtcaaggtaaaaaacactatgattgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcg 25522343  T
Q  216 caggtcagcaaatttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcat 315  Q
     || |  | || |||||| ||| ||| ||||||||||| ||||||||||| |||| | ||||||  ||| | | |||| | ||| || ||||||||| ||    
T  25522342 aagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggat 25522243  T
Q  316 tctggaatatttccttgtagcctgttgttg 345  Q
    ||||||||||| ||||||||| ||||||||    
T  25522242 tctggaatattgccttgtagcttgttgttg 25522213  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 8523841 - 8523948
Alignment:
Q  244 aaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatatttccttgtagcctgttgt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||| | ||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  8523841 aaattgacaacaccactcaagttgtttgatgatagatctagtctacttaggtttgcaaggttgaaaatggattctggaatattgccttgtagcctgttgt 8523940  T
Q  344 tgcttaga 351  Q
    | ||||||    
T  8523941 tacttaga 8523948  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 12249269 - 12249382
Alignment:
Q  228 tttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatagatctagttcatttagatatgtcaggttgaaaatgcattctggaatattt 327  Q
    |||||| ||||||| |||||  |||||||||||||||||||||||||||| |||||||  | ||||   ||| |||||||||||| ||| |||||||||     
T  12249269 tttggaaaagagttgaaaatcaacaacaccactcaagttgtttgatgataaatctagtctagttagggttgtaaggttgaaaatggattttggaatattg 12249368  T
Q  328 ccttgtagcctgtt 341  Q
    ||||||||| ||||    
T  12249369 ccttgtagcttgtt 12249382  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 32681465 - 32681314
Alignment:
Q  112 ttgacagaagataatttcagtatttgtaggttagtaaaactataagtgacattggattcgaattttagtgacaactgactattccttgaaagggataaaa 211  Q
    |||| |||||| |||| || | ||||||||| || |||| ||||| ||||||||||||| || ||||||||||| |||||||||| |||||| |||| ||    
T  32681465 ttgatagaagacaattccaatgtttgtaggtaaggaaaagtataactgacattggattcaaagtttagtgacaattgactattccatgaaagagatagaa 32681366  T
Q  212 tttccaggtcagcaaatttggagaagagtttaaaattgacaacaccactcaa 263  Q
      |  || |  | || |||||||||||||| ||||||||||| |||||||||    
T  32681365 agtggagatgtgtaagtttggagaagagttgaaaattgacaagaccactcaa 32681314  T

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