View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_low_1 (Length: 694)
Name: NF20108_low_1
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 11 - 680
Target Start/End: Original strand, 47532723 - 47533391
Alignment:
| Q |
11 |
gaagcaaaggcgaatgctctgtatgaatatgattatggctgcagctgcagctgccttgatatgcatctatgacctgtacgttttggaagaaagtgacagt |
110 |
Q |
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| T |
47532723 |
gaagcaaaggcgaatgctctgtatgaatatgattatggctgcagctgcagctgccttgatatgcatctatgacctgtaccttttggaagaaagtgacagt |
47532822 |
T |
|
| Q |
111 |
gaaagtgaagccacagatactgatagtgaagccacggacaccgatagtgaagccacaaacactgacagtgaagccaccgacactgatagtgaaagtaccg |
210 |
Q |
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| T |
47532823 |
gaaagtgaagccacagatactgatagtgaagccacggacaccgatagtgaagccacaaacactgacagtgaagccaccgacactgatagtgaaagtactg |
47532922 |
T |
|
| Q |
211 |
gaaggaaaactagtgatcaatagaaaaggaaacaactaaaactgcagctatggtnnnnnnngttaaattcaggatgaatcagcttatactctgcttaaat |
310 |
Q |
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| T |
47532923 |
gaaggaaaactagtgatcaatagaaaaggaaacaactaaaactgcagctatggtaaaaaa-gttaaattcaggatgaatcagcttatactctggttaaat |
47533021 |
T |
|
| Q |
311 |
tgctagtgaatttgagaaccctgttgcaatgtgaattacggtattaactgatagtgagaacattaaatgcattttgattatacaattttcaagttttcga |
410 |
Q |
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| T |
47533022 |
tgctagtgaatttgagaaccctgttgcaatgtgaattacggtattaactgatagtgagaacattaaatgcattttgattatacaattttcaagttttcga |
47533121 |
T |
|
| Q |
411 |
agaaatttattttattgtttcaagtaattagtagttttgaaaaattaaactaaatggtctttaggaacaattttgcctctttgctatggacagcttaatt |
510 |
Q |
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| T |
47533122 |
agaaatttattttattgtttcaagtaattagtagttttgaaaaattaaactaaatggtctttaggaacaattatgcctctttgctatggacagcttaatt |
47533221 |
T |
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| Q |
511 |
tcttgttcttctaatgatcatgttatcctagagtagggtctgttagtatttgtggttcaacagttaggcttcttctgctcatggagtaaattgatctgca |
610 |
Q |
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| T |
47533222 |
tcttgttcttctaattatcatgttatcctagagtagggtctgttagtatttgtggttcaacagttaagctacttctgctcatggagtaaactgatctgca |
47533321 |
T |
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| Q |
611 |
ttaatttattttccaataagagcttcttttcttcgcaaccgagaatcccccggacccaaactaccaactg |
680 |
Q |
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| T |
47533322 |
ttaatttattttccaataagagcttcttttcttcgcaaccgagaatcccctggacccaaactaccaactg |
47533391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 39583688 - 39583603
Alignment:
| Q |
54 |
gctgcagctgccttgatatgcatctatgacctgtacgttttggaagaaagtgacagtgaaagtgaagccacagatactgatagtga |
139 |
Q |
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| T |
39583688 |
gctgcggctgcattgatatgtatctattacctgaaatatttggaagaaagtgacagtgaaagtgaagacacagacacagatagtga |
39583603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 39627257 - 39627335
Alignment:
| Q |
60 |
gctgccttgatatgcatctatgacctgtacgttttg---gaagaaagtgacagtgaaagtgaagccacagatactgata |
135 |
Q |
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| T |
39627257 |
gctgcgttgataggcatctattacctgtacattttggaagaagaaagtgatagtgaaagtgaagacacggacactgata |
39627335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 39616535 - 39616598
Alignment:
| Q |
60 |
gctgccttgatatgcatctatgacctgtacgttttggaag---aaagtgacagtgaaagtgaag |
120 |
Q |
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| T |
39616535 |
gctgcgttgataggcatctattacctgtaccttttagaagaagaaagtgacagtgaaagtgaag |
39616598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 589
Target Start/End: Original strand, 39617304 - 39617415
Alignment:
| Q |
476 |
aacaattttgcctctttgctatggacagcttaatttcttgttcttctaatgatcatgttatcctagagtagggtctgttagtatttgtggttcaacagtt |
575 |
Q |
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| T |
39617304 |
aacaattttgtttctttgccgtgcacaccttcatttctgtttcttctgattttcatgtta-cctagagtcgggtctgttagtattagt-gctcaacagct |
39617401 |
T |
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| Q |
576 |
aggcttcttctgct |
589 |
Q |
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| T |
39617402 |
aggcttgttctgct |
39617415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 39627545 - 39627650
Alignment:
| Q |
394 |
aattttcaagttttcgaagaaattt-attttattgtttcaagtaattagtagttttgaaaaattaaactaaatggtctttaggaacaattttgcctcttt |
492 |
Q |
| |
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|||||||||||| ||| ||||||| ||| | |||||| | | |||||||||||||| | ||| ||||||| | | |||| ||||||||||||||||| |
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| T |
39627545 |
aattttcaagttaacgaggaaattttattattttgttttatgaaattagtagttttggatgattgaactaaactgccattagaaacaattttgcctcttt |
39627644 |
T |
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| Q |
493 |
gctatg |
498 |
Q |
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|||||| |
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| T |
39627645 |
gctatg |
39627650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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