View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_low_11 (Length: 337)
Name: NF20108_low_11
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 149 - 318
Target Start/End: Original strand, 42933257 - 42933426
Alignment:
| Q |
149 |
gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctc |
248 |
Q |
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| T |
42933257 |
gcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctc |
42933356 |
T |
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| Q |
249 |
ataaattgtttggtgttggtaaaatcaccaacatgatcaagaatgttccacctcatcttagagatcatac |
318 |
Q |
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| T |
42933357 |
ataaattgtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatcatac |
42933426 |
T |
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Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 42933123 - 42933205
Alignment:
| Q |
9 |
agcagagaatttgcagggtgcataggcagcggagacgcttagcttattataaaatttagggtttggtttttccatgaagcatg |
91 |
Q |
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| T |
42933123 |
agcagaaaatttgcagggtgcataggcagcggagacgcttagcttattataaaatttagggtttggtttttccatgaagcatg |
42933205 |
T |
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