View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_low_17 (Length: 274)
Name: NF20108_low_17
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 13394304 - 13394457
Alignment:
| Q |
84 |
cgagtccattcgaacatgtcactaacactaacatgtagatattggtaacaatctaaaagaaataaaagcgattaaatattatgtgtgtgttgaagtcgtg |
183 |
Q |
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| T |
13394304 |
cgagtccatctgaacatgtcactaacactaacatgtcgatattggtaacaatctaaaagaaataaaagcgattaaatattacgtgtgtgttgaagtcgtg |
13394403 |
T |
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| Q |
184 |
ttaatcgtgtcagacattagatacactttcaatcgatgctacgtagaatttaaca |
238 |
Q |
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| T |
13394404 |
ttaatcgtgtcagacattag-tacactttcaatcgatgctacgtagaatttaaca |
13394457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13394214 - 13394278
Alignment:
| Q |
1 |
ttttcttcattgcaacttggtaaggcaaatatatattttagttcctttgttccttcatttattac |
65 |
Q |
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| T |
13394214 |
ttttcttcattgcaacttggtaagacaaatatatattttagttcctttgttccttcatttattac |
13394278 |
T |
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