View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20108_low_2 (Length: 607)
Name: NF20108_low_2
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_low_2 |
 | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 567; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 5129808 - 5130398
Alignment:
| Q |
1 |
aagggtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaagttaatgggtatgtgaattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5129808 |
aagggtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtg |
5129907 |
T |
|
| Q |
101 |
tgagaaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5129908 |
tgagaaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggt |
5130007 |
T |
|
| Q |
201 |
ttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaactttgta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5130008 |
ttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaattttgta |
5130107 |
T |
|
| Q |
301 |
tggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5130108 |
tggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcgg |
5130207 |
T |
|
| Q |
401 |
atataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagattt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5130208 |
atataaactttgcatgattcggattaagaatggactcagagaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagattt |
5130307 |
T |
|
| Q |
501 |
ttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5130308 |
ttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaataattgtttgtttt |
5130398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 6 - 591
Target Start/End: Original strand, 26619215 - 26619801
Alignment:
| Q |
6 |
tttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619215 |
tttattttaaacaaggtgagaatcctatatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
26619314 |
T |
|
| Q |
106 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggtttgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26619315 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgtt |
26619414 |
T |
|
| Q |
206 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaactttgtatggca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26619415 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggca |
26619514 |
T |
|
| Q |
306 |
tattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatata |
405 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619515 |
tattggtattatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatata |
26619614 |
T |
|
| Q |
406 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacataga-tttttcc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26619615 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttttcc |
26619714 |
T |
|
| Q |
505 |
gaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26619715 |
gaaataagctaaagcgttaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaataagtgtttgtttt |
26619801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 6 - 591
Target Start/End: Original strand, 26725128 - 26725714
Alignment:
| Q |
6 |
tttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26725128 |
tttattttaaacaaggtgagaatcctatatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgaga |
26725227 |
T |
|
| Q |
106 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggtttgtt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26725228 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggtttgtt |
26725327 |
T |
|
| Q |
206 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaactttgtatggca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
26725328 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaatggtgattgtacttgaacattatgaaaattgggtaaaaatttgtatggca |
26725427 |
T |
|
| Q |
306 |
tattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatata |
405 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26725428 |
tattggtattatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtctcggattctacacttatttcccttcagttcggatata |
26725527 |
T |
|
| Q |
406 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacataga-tttttcc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26725528 |
aactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgagatagattttttcc |
26725627 |
T |
|
| Q |
505 |
gaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26725628 |
gaaataagctaaagcgttaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaataagtgtttgtttt |
26725714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 1507408 - 1506818
Alignment:
| Q |
1 |
aagggtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaagttaatgggtatgtgaattgtg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507408 |
aagggtttattttaaacaagttgagaatcctaaatttaagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtg |
1507309 |
T |
|
| Q |
101 |
tgagaaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1507308 |
tgagaaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattgttgttgaagatcattgttaatggt |
1507209 |
T |
|
| Q |
201 |
ttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaactttgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1507208 |
ttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtactagaaccttatgaaaattgggtaaaaatttgta |
1507109 |
T |
|
| Q |
301 |
tggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1507108 |
tggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcgg |
1507009 |
T |
|
| Q |
401 |
atataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagattt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
1507008 |
atataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttactggtttgacgtagattt |
1506909 |
T |
|
| Q |
501 |
ttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1506908 |
ttctgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaataagtgtttgtttt |
1506818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 64 - 515
Target Start/End: Original strand, 5576486 - 5576932
Alignment:
| Q |
64 |
tgaattgttgattaagttaatgggtatgtgaattgtgtgagaaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
5576486 |
tgaattgttgattaagttaatgggtatgtgaattgtgtgagaaaatttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagat |
5576585 |
T |
|
| Q |
164 |
aattagagaattattgttgaagatcattgttaatggtttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgatt |
263 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5576586 |
aattagagaatttttgttgaagatcattgttaatggattgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaacgcgatt |
5576685 |
T |
|
| Q |
264 |
gtacttgaaccttatgaaaattgggtaaaactttgtatggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttg |
363 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5576686 |
gtacttcaaccttatgaaaattgggtaaaaatttgtatggcatgttggtagtatattcatcatatctctttctgtgtaatctggaattaagtaattgttg |
5576785 |
T |
|
| Q |
364 |
aagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaa |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5576786 |
aagtttcggattctacacttatttcccttcagtttgaat----actttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttggaaat |
5576881 |
T |
|
| Q |
464 |
ttctgctgaaatttacttacgggtttgacatagatttttccgaaataagcta |
515 |
Q |
| |
|
| |||||||| | | ||||||||||| | |||||||||||||||||||| |
|
|
| T |
5576882 |
tcatgctgaaaatggc-tacgggtttgatgtggatttttccgaaataagcta |
5576932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 335 - 530
Target Start/End: Complemental strand, 24627838 - 24627643
Alignment:
| Q |
335 |
ctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatgga |
434 |
Q |
| |
|
||||||||||||||||| ||| ||| | |||||||||||||||||||||| ||||||| |||| |||||||| |||| ||| ||||||||| |||| | |
|
|
| T |
24627838 |
ctgtgtaatctggaatttagtgattatcgaagtttcggattctacacttaattccctttagtttggatataatttttgtatgtttcggattaggaataaa |
24627739 |
T |
|
| Q |
435 |
ctcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaatctaag |
530 |
Q |
| |
|
||||||||| ||||||||||||| ||| || |||| || ||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
24627738 |
ttcagaaaacacatttaaagtttggaaatttatgcttgaaattacttacgggtttgacatggatttttccaggataagctaaaacgtgaatttaag |
24627643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 5576443 - 5576494
Alignment:
| Q |
5 |
gtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgtt |
57 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5576443 |
gtttatttcaaacaaggtgagaatcctaaa-ttaagcttgaatttgaattgtt |
5576494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 334 - 406
Target Start/End: Complemental strand, 14191521 - 14191449
Alignment:
| Q |
334 |
tctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataa |
406 |
Q |
| |
|
||||||||| ||| |||| ||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||| |
|
|
| T |
14191521 |
tctgtgtaacctgaaattgagtaattgttgaagttttggattgtacactcaattcccttcaattcggatataa |
14191449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 2522312 - 2522371
Alignment:
| Q |
223 |
gagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaa |
282 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
2522312 |
gagttgctgatcaaaatggattattactgttaaaagtgattgtacttgaactttatgaaa |
2522371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 5 - 525
Target Start/End: Original strand, 14529510 - 14530024
Alignment:
| Q |
5 |
gtttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaagttaatgggtatgtgaattgtgtgag |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14529510 |
gtttatttcaaacaaggtgagaatcctaaatt-aagcttgaatttgaattgttatagattgaattgttgattaagttaatgggtatgtgaattgtgtgag |
14529608 |
T |
|
| Q |
105 |
aaagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggtttgt |
204 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
14529609 |
aaagtttgaatttctatgacaattttcatattatagtagcttggttcatgaaatgagataattagagaatttttgttgaagatcattgttaatggattgt |
14529708 |
T |
|
| Q |
205 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaactttgtatggc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14529709 |
tgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaagg----tgtacttgaaccttatgaaaattgggtaaaaattcgtatggc |
14529804 |
T |
|
| Q |
305 |
atattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatat |
404 |
Q |
| |
|
|| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
14529805 |
atgttggtagtatatgcatcatatctctttctgtgtaatctggaattaagtagttgttgaagtttcggattctacacttatttcccttcagtttgaatat |
14529904 |
T |
|
| Q |
405 |
aaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttcc |
504 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| | |||||||| | | ||||||||||| | ||||||||| |
|
|
| T |
14529905 |
aaactttgcatgactcggattaagaatggactcagaaaacacatttaaagtttggaaattcatgctgaaaatggc-tacgggtttgatgtggatttttcc |
14530003 |
T |
|
| Q |
505 |
gaaataagctaaaacgtgaat |
525 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
14530004 |
gaaataagctacaatgtgaat |
14530024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 190 - 591
Target Start/End: Original strand, 2745933 - 2746336
Alignment:
| Q |
190 |
ttgttaatggtttgttgttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggt |
289 |
Q |
| |
|
||||| ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2745933 |
ttgttgatggtttattgctgatgtaagtaagatgagttggtgatcaaaatgtagtattattgataaaagtgattgtacttgaaccttatgaaaattgggt |
2746032 |
T |
|
| Q |
290 |
aaaa-ctttgtatggcatattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttc |
388 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||||| |||||| | || ||||| | |||||||||||||||| ||| |||||||||||||||||||| ||| |
|
|
| T |
2746033 |
aaaaacttcgtatggcatatttgtagtatattcatcatatatattgttgtgttacctggaattaagtaattattggagtttcggattctacacttaattc |
2746132 |
T |
|
| Q |
389 |
ccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctg-aaatttacttacgggt |
487 |
Q |
| |
|
|||||||| ||||||||| |||| ||| || |||||| ||||||| ||||||||||| ||| ||| ||| || || ||||| |||||| | ||||||| |
|
|
| T |
2746133 |
acttcagtttggatataaattttgtatgttttggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggt |
2746232 |
T |
|
| Q |
488 |
ttgacatagatttttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttg |
587 |
Q |
| |
|
||| | | ||||| |||||||||||||||||||||||| ||| ||||| ||||| ||| |||| |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
2746233 |
ttggcttggatttgtccgaaataagctaaaacgtgaatttaaattgggggaatggttccggaacttaatatatatgttcaaagggttgaataagtgtttg |
2746332 |
T |
|
| Q |
588 |
tttt |
591 |
Q |
| |
|
|||| |
|
|
| T |
2746333 |
tttt |
2746336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 322 - 591
Target Start/End: Complemental strand, 5836368 - 5836098
Alignment:
| Q |
322 |
gtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcg |
421 |
Q |
| |
|
||||||||||| |||||||| | |||| | ||||| ||||| ||| ||| |||||||||| |||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
5836368 |
gtcatatctctggctgtgtaacccataattgaataattattgaatttttggactctacacttaattcccttcagtttggatataaattttgtatgtttcg |
5836269 |
T |
|
| Q |
422 |
gattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaat--ttacttacgggtttgacatagatttttccgaaataagctaaaac |
519 |
Q |
| |
|
||||| ||||||| | ||||||||| ||| ||||||| | || |||||||| || | |||||||||| | |||||||| | ||||||||||||| |
|
|
| T |
5836268 |
gattaggaatggatttagaaaacgcgtttgaagtttggatt-ttatgctgaaaaaattgcctacgggtttggccaggatttttctgtaataagctaaaac |
5836170 |
T |
|
| Q |
520 |
gtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
|||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5836169 |
gtgaatttaaattgtgtgaatggttccagaacttaatatgtatgttcaaagggctgaataagtgtttgtttt |
5836098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 2745794 - 2745927
Alignment:
| Q |
7 |
ttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaag-ttaatgggtatgtgaattgtgtgaga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||| ||||||| || |
|
|
| T |
2745794 |
ttattttaaacaaggtgagaatcctaaatttaagcttgaa-ttgaattgttatagattgaattgttgattaagctttatgggtatgtgatttgtgtgtga |
2745892 |
T |
|
| Q |
106 |
aagtttgaatttctatgataattttcatgttagag |
140 |
Q |
| |
|
||| | | ||||||||||||| ||||||||||||| |
|
|
| T |
2745893 |
aagataggatttctatgataactttcatgttagag |
2745927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 496 - 591
Target Start/End: Complemental strand, 5939584 - 5939489
Alignment:
| Q |
496 |
gatttttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5939584 |
gatttttccgaaataagctaaaacgtgaatttaaattgtgtgaatagttccagaacttaatatgtatgttcgaagggctgaataagtgtttgtttt |
5939489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 458
Target Start/End: Complemental strand, 5940142 - 5940006
Alignment:
| Q |
322 |
gtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcg |
421 |
Q |
| |
|
||||||||||| |||||||| | |||| | ||||| ||| | ||| ||| |||||||||| |||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
5940142 |
gtcatatctctggctgtgtaacccataattgaataattattggatttttggactctacacttaattcccttcagtttggatataaattttgtatgtttcg |
5940043 |
T |
|
| Q |
422 |
gattaagaatggactcagaaaacgcatttaaagtttg |
458 |
Q |
| |
|
||||| ||||||| | |||||||| ||| ||||||| |
|
|
| T |
5940042 |
gattaggaatggatttagaaaacgggtttgaagtttg |
5940006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 591
Target Start/End: Original strand, 68715 - 69291
Alignment:
| Q |
7 |
ttattttaaacaaggtgagaatcctaaatttaagcttgaatttgaattgttatagactgaattgttgattaag-ttaatgggtatgtgaattgtgtgaga |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
68715 |
ttattttaaacaaggtgaaaatcctaaatttaagcttgaatt-gaattgttatagattgaattgttgattaagctttatgggtatgtgaattgtgtga-- |
68811 |
T |
|
| Q |
106 |
aagtttgaatttctatgataattttcatgttagagtagcttggttcatgaaatgagataattagagaattattgttgaagatcattgttaatggtttgtt |
205 |
Q |
| |
|
||| | | ||||||||||||| |||||||||||| ||| ||||||||||||| | | ||||||||||||| ||||||| |||||||||| ||||||| || |
|
|
| T |
68812 |
aagataggatttctatgataactttcatgttagaatagattggttcatgaaagggggtaattagagaattgttgttgatgatcattgttgatggtttatt |
68911 |
T |
|
| Q |
206 |
gttgatgtaagaaagatgagttggtgatcaaaatggtgtattattgttaaaggtgattgtacttgaaccttatgaaaattgggtaaaa-ctttgtatggc |
304 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
68912 |
--------aagtaagatgagttggtgatcaaaatgtagtattattgttaaaagtgactgtacttgaaccttatgaaaattgggtaaaaacttcgtatggc |
69003 |
T |
|
| Q |
305 |
atattggtagtatattcgtcatatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatat |
404 |
Q |
| |
|
||||| ||||||||||| |||||| | || ||||| |||||||||||||||||| | | |||||| ||||||||||||| ||| |||||||| |||||| |
|
|
| T |
69004 |
atatttgtagtatattcatcatatatattgttgtgttatctggaattaagtaattatcggagtttcagattctacacttaattcacttcagtttggatat |
69103 |
T |
|
| Q |
405 |
aaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctg-aaatttacttacgggtttgacatagatttttc |
503 |
Q |
| |
|
||| |||| ||| || |||||| ||||||| ||||||||||| ||| ||| ||| || || ||||| |||||| | |||||||||| | | ||||| || |
|
|
| T |
69104 |
aaattttgtatgttttggattaggaatggattcagaaaacgcgtttgaaggttggaattttatgctgaaaatttgcctacgggtttggcttggatttgtc |
69203 |
T |
|
| Q |
504 |
cgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaagggctgaataagtgtttgtttt |
591 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
69204 |
cgaaataagctaaaacgtgaatttaaattgggggaatggttccagaacttaatatatatgttcaaagggttgaataagtgtttgtttt |
69291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 346 - 587
Target Start/End: Complemental strand, 20112630 - 20112390
Alignment:
| Q |
346 |
ggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacg |
445 |
Q |
| |
|
|||||| ||||||| ||| | |||| ||||||||||||| || |||| |||| ||||||||| |||| ||||||||||||| ||| || |||||||||| |
|
|
| T |
20112630 |
ggaattgagtaattattggattttcagattctacacttaatttcctt-agttgggatataaattttgtatgattcggattagaaatagattcagaaaacg |
20112532 |
T |
|
| Q |
446 |
catttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaatctaagttgggtgaatgactc |
545 |
Q |
| |
|
| ||||||||||| | | |||||||| | |||||||||||| ||| |||||||||| |||||||||||| |||| | |||| | |||||| || |
|
|
| T |
20112531 |
cgtttaaagtttggattttggtgctgaaaactgcttacgggtttggcatggatttttccggaataagctaaaaagtgagtttaagattattgaatggttc |
20112432 |
T |
|
| Q |
546 |
cagaacataatatgtatgttcaaagggctgaataagtgtttg |
587 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
20112431 |
cagaacttaatatgtatgttttatgggctgaataagagtttg |
20112390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 534
Target Start/End: Original strand, 3811476 - 3811549
Alignment:
| Q |
461 |
aaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaatctaagttgg |
534 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||| || |||| ||||||||||||||||| || | |||||||| |
|
|
| T |
3811476 |
aaattatgctgaaaatggcttacgagtttgacatggactttttcgaaataagctaaaacgagattttaagttgg |
3811549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 371 - 591
Target Start/End: Complemental strand, 9392748 - 9392528
Alignment:
| Q |
371 |
ggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgct |
470 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| ||| |||| ||| |||||||| ||||||| ||| |||||| ||| ||||| | | || |||| |
|
|
| T |
9392748 |
ggattctacacttaattcccttcagtttaaatacaaattttgtatgtttcggatttggaatggattcacaaaacgtgtttcaagttaggatt-ttatgct |
9392650 |
T |
|
| Q |
471 |
gaaa-tttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacataatatgtatgttcaaa |
569 |
Q |
| |
|
|||| ||| | |||||||| | | | ||||||| |||||||||||||||||||||| ||| ||||| ||| | |||||||| | ||||||||||||||| |
|
|
| T |
9392649 |
gaaaatttgcctacgggttcggcttggattttttcgaaataagctaaaacgtgaatttaaattgggcgaaaggttccagaacttgatatgtatgttcaaa |
9392550 |
T |
|
| Q |
570 |
gggctgaataagtgtttgtttt |
591 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9392549 |
gggctgaataagtgtttgtttt |
9392528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 489
Target Start/End: Original strand, 23307261 - 23307425
Alignment:
| Q |
324 |
catatctctttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcgga |
423 |
Q |
| |
|
||||||| ||||||||||| | |||||| |||||||||| | ||| |||||||| ||||||| ||||||||| ||| | |||||||| ||||||||| |
|
|
| T |
23307261 |
catatctttttctgtgtaaccaggaattgtgtaattgttggaattttggattctatgcttatttaccttcagtttggacacaaactttgtatgattcggg |
23307360 |
T |
|
| Q |
424 |
ttaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggttt |
489 |
Q |
| |
|
||| | ||| || ||||||||||| ||||| || | ||||||||| ||||| |||||||||| |
|
|
| T |
23307361 |
ttagatacggattcgaaaaacgcatttgaagttggt-agattctgctggaatttgtttacgggttt |
23307425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 489
Target Start/End: Original strand, 17302821 - 17302977
Alignment:
| Q |
333 |
ttctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatg |
432 |
Q |
| |
|
||||| |||| |||||| | | ||||||||||||||| |||||||| | | ||||||||| |||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
17302821 |
ttctgggtaaactggaagtgaataattgttgaagttttagattctacgttcaattcccttcaattcggatataaattttgtatgattcggattagaaatg |
17302920 |
T |
|
| Q |
433 |
gactcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggttt |
489 |
Q |
| |
|
| ||||||||| ||| ||||||| |||||||| || || ||||||||||||| |
|
|
| T |
17302921 |
aattcagaaaacatattcgaagtttggtaaattctgttggaaaatacttacgggttt |
17302977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 25337115 - 25337032
Alignment:
| Q |
375 |
tctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttg |
458 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| |||| ||| ||||||||| ||||||| | ||||||||| ||| ||||||| |
|
|
| T |
25337115 |
tctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgtttgaagtttg |
25337032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 525
Target Start/End: Original strand, 20809614 - 20809798
Alignment:
| Q |
335 |
ctgtgtaatctggaattaagtaattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatgga |
434 |
Q |
| |
|
|||||||| | |||||| ||||||| ||| ||||||| |||| || ||||||||||| ||||||||| |||| ||| ||| ||||||||| ||| |
|
|
| T |
20809614 |
ctgtgtaaccaggaattgagtaattattggagtttcgaattccacgcttatttccctct-----ggatataaattttgtatgtttcagattaagaacgga |
20809708 |
T |
|
| Q |
435 |
ctcagaaaacgcatttaaagtttgtaaaattctgctgaaatttacttacgggtttgacatagatttttccgaaataagctaaaacgtgaat |
525 |
Q |
| |
|
||||||||||||||||||||||| ||| | | ||| || | | ||||||||||| | |||||||||||||||||||| || |||||| |
|
|
| T |
20809709 |
ttcagaaaacgcatttaaagtttggaaattcatactgcaaatggc-tacgggtttgatgtggatttttccgaaataagctacaatgtgaat |
20809798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 17275923 - 17275835
Alignment:
| Q |
386 |
ttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaagtttgtaaaattctgctgaaa |
474 |
Q |
| |
|
|||||||||||| ||||||| | || | ||||||| ||||| |||||| || ||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
17275923 |
ttcccttcagtttggatatagatttggtatgattctgattagaaatggattcgaaaaacgcatttgaagtttggtaaattctgcagaaa |
17275835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University