View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20108_low_22 (Length: 251)

Name: NF20108_low_22
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20108_low_22
NF20108_low_22
[»] chr4 (1 HSPs)
chr4 (1-241)||(11118406-11118646)
[»] chr6 (2 HSPs)
chr6 (22-220)||(25522642-25522840)
chr6 (47-224)||(24141109-24141286)
[»] chr5 (7 HSPs)
chr5 (22-234)||(42123768-42123980)
chr5 (22-226)||(41713168-41713372)
chr5 (22-220)||(34240156-34240354)
chr5 (22-217)||(42129170-42129365)
chr5 (98-220)||(41571706-41571828)
chr5 (126-223)||(42118042-42118139)
chr5 (23-226)||(34232414-34232617)
[»] chr2 (3 HSPs)
chr2 (116-220)||(12248744-12248848)
chr2 (22-194)||(32681567-32681735)
chr2 (167-222)||(11994132-11994187)
[»] chr3 (1 HSPs)
chr3 (127-219)||(8523391-8523483)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11118646 - 11118406
Alignment:
Q  1 caatgcatccgaaatctctgtccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118646 caatgcatccgaaatctctgtccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaac 11118547  T
Q  101 ttgggaaacaacaatttgactggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118546 ttgggaaacaacaatttgactggtgtcattccacaatgtcttgctgaatcaccattcctttatgttttgaatctacaaatgaacaaatttcatggcactt 11118447  T
Q  201 tgcctagtaacttttcaaaggacagtagtattgtgtctctg 241  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  11118446 tgcctagtaacttttcaaaggaaagtcgtattgtgtctctg 11118406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 25522642 - 25522840
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    |||||||||||||  |||||||||| ||| |||||| |||||||  |||||| |||||||||||||||||||| | ||||||||| ||||||||||||||    
T  25522642 ccttgatcttagtgataatttactggatgatgaaatacctttggttgtttgcaatatcagttcacttgaatttctcaacttgggatacaacaatttgact 25522741  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaag 220  Q
    ||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| | |||||||||||||||||| |||||||||||||||    
T  25522742 ggtatcattccacaatgtcttgctgaatcaacatcccttcaagttttgaatctacaaatgaatagatttcatggcactttgccaagtaacttttcaaag 25522840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 224
Target Start/End: Complemental strand, 24141286 - 24141109
Alignment:
Q  47 aatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgactggtgtcattccacaatgtcttgctg 146  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||||||| | ||||||| | ||||||||||||| ||| ||||||||||||||||| |||    
T  24141286 aatggtgaaatccatttggctatttgcaatatcagttcacttgaatttcttaacttggaatacaacaatttgaccggtatcattccacaatgtctttctg 24141187  T
Q  147 aatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaaggaca 224  Q
    | ||| ||| ||||   ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  24141186 attcaccatcccttcgagttttgaatctacaaatcaacacatttcatggcactttgccaagtaacttttcaaaggaca 24141109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 42123980 - 42123768
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| | ||||||||  ||||| ||||||||    
T  42123980 ccttgatcttagtcataatttactgaatggtgaaatccctttggcagtttgcaatatgagttcacttcaatttctcaacttgggttacaacgatttgact 42123881  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaagg 221  Q
    ||| |||||||||||||| ||||||||||| ||| |||| | ||||||||||||||||||||||  ||| |||| |||||||| |||||||||||||||     
T  42123880 ggtatcattccacaatgttttgctgaatcaccatcccttcaagttttgaatctacaaatgaacatgttttatggtactttgccaagtaacttttcaaaga 42123781  T
Q  222 acagtagtattgt 234  Q
    || ||||||||||    
T  42123780 actgtagtattgt 42123768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 41713168 - 41713372
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    ||||||||| |||| ||| |||||   ||||||||||  | || || ||||| |||| |||||||| | |||| | ||||||| ||||||||| ||||||    
T  41713168 ccttgatctaagttataacttactacgtggtgaaatctttgtgtcaatttgcaatatgagttcactgggatttctcaacttggcaaacaacaaattgact 41713267  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaagg 221  Q
    |||  ||||||||||||||||||| | | | ||| |||| | |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  41713268 ggtaccattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaattttatggcactttgccaagtaacttttcaaagg 41713367  T
Q  222 acagt 226  Q
    |||||    
T  41713368 acagt 41713372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 34240156 - 34240354
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    |||||||||||||||||| |||||   |||| |  || || || || ||||| || | ||||| ||||||||| | ||||||||| |||||||||| ||     
T  34240156 ccttgatcttagttttaacttacttgttggtaacctctctgtgtcaatttgcaatttgagttcccttgaatttctcaacttgggacacaacaatttcaca 34240255  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaag 220  Q
    |||  ||||||||||||||||||| | | | ||| |||| |  ||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  34240256 ggtaacattccacaatgtcttgctaatttaccatcccttcaaattttggatctacaaatgaacaacttttatggcactttgcctaataacttttcaaag 34240354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 42129365 - 42129170
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    |||||||||||||||||| ||||||  ||||||  || ||  | || ||||| || | ||||||||| ||||  | ||||||| | ||||  |||||||     
T  42129365 ccttgatcttagttttaacttactggctggtgacctctctgagtcaatttgcaatttgagttcacttcaattactcaacttggcacacaatcatttgaca 42129266  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttca 217  Q
    | | |||||||||||||||||||| | ||| | |||||| | |||||| || | |||||||| | |||| |||| |||||||| ||||||||||||    
T  42129265 gatatcattccacaatgtcttgctaattcatcgttccttcaagttttggatttgcaaatgaatagattttatggaactttgccaagtaacttttca 42129170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 41571706 - 41571828
Alignment:
Q  98 aacttgggaaacaacaatttgactggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggca 197  Q
    ||||||| | ||||||| ||||| ||   ||||||||| ||||||||  | | | ||| |||| | |||||| || ||||||||||||||||| ||||||    
T  41571706 aacttggcacacaacaaattgacaggcaccattccacattgtcttgcaaacttatcatcccttcaagttttggatttacaaatgaacaaattttatggca 41571805  T
Q  198 ctttgcctagtaacttttcaaag 220  Q
    |||| || |||||||||||||||    
T  41571806 ctttaccaagtaacttttcaaag 41571828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 42118139 - 42118042
Alignment:
Q  126 tcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaaggac 223  Q
    |||||||||||||||||||| | ||| || ||||| | |||||| || | |||||||| | |||| |||| |||||||| |||||||||||| |||||    
T  42118139 tcattccacaatgtcttgctaattcatcaatccttcaagttttggatttgcaaatgaatagattttatggaactttgccaagtaacttttcagaggac 42118042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 34232414 - 34232617
Alignment:
Q  23 cttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgactg 122  Q
    ||||||||||||| ||| |||||| | ||||| ||| ||||| |  |||||  ||| |  ||||||  |||| | |||||||   ||||||| ||||| |    
T  34232414 cttgatcttagttctaacttactggaaggtgatatctctttgtcgatttgcagtatgaaatcacttcgatttctcaacttggcgcacaacaaattgaccg 34232513  T
Q  123 gtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaagga 222  Q
    || |||||||||||| ||||||| | | | ||| |||  | || ||| ||||||||||||| | |||| ||||| ||||||| |||||||| |||||| |    
T  34232514 gtatcattccacaatatcttgctaatttatcatccctacaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagta 34232613  T
Q  223 cagt 226  Q
    ||||    
T  34232614 cagt 34232617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 12248848 - 12248744
Alignment:
Q  116 ttgactggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaactttt 215  Q
    ||||| ||| |||||||||||||||||||||| | | ||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  12248848 ttgacaggtatcattccacaatgtcttgctgatttatcatcccttcaagttttgaatctacaaatgaacaaatttcatggcactttgccaagtaacttct 12248749  T
Q  216 caaag 220  Q
    |||||    
T  12248748 caaag 12248744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 32681567 - 32681735
Alignment:
Q  22 ccttgatcttagttttaatttactgaatggtgaaatccctttggcagtttgcgatatcagttcacttgaatttttgaacttgggaaacaacaatttgact 121  Q
    |||||||||||||||||||   ||| ||||||||| |||||||||||||||| ||||    |||||||||||| | |||||  || ||||| ||||||||    
T  32681567 ccttgatcttagttttaatcagctggatggtgaaa-ccctttggcagtttgcaatatg---tcacttgaatttctcaactttagatacaactatttgact 32681662  T
Q  122 ggtgtcattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatg 194  Q
    ||| ||||||||||| |||||  | | ||| ||| |||| | ||||| |||||||||||||||| ||||||||    
T  32681663 ggtatcattccacaacgtcttattaattcaccatcccttaaagttttaaatctacaaatgaacacatttcatg 32681735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 11994132 - 11994187
Alignment:
Q  167 ttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaagga 222  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||    
T  11994132 ttgaatctacaaatgaacacatgtcatggcactttgccaagtaacttctcaaagga 11994187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 8523483 - 8523391
Alignment:
Q  127 cattccacaatgtcttgctgaatcaacattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctagtaacttttcaaa 219  Q
    ||||||||||||||||||| | | | ||| |||| | |||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  8523483 cattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttcatggaactttgccaagtaacttttcaaa 8523391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University