View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20108_low_7 (Length: 382)

Name: NF20108_low_7
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20108_low_7
NF20108_low_7
[»] chr2 (8 HSPs)
chr2 (113-336)||(1355983-1356212)
chr2 (18-60)||(1356208-1356250)
chr2 (28-99)||(1362995-1363064)
chr2 (254-317)||(532157-532221)
chr2 (186-222)||(1362856-1362892)
chr2 (296-332)||(5095807-5095843)
chr2 (265-328)||(18182498-18182562)
chr2 (263-317)||(3094282-3094337)
[»] chr6 (2 HSPs)
chr6 (259-332)||(28606565-28606639)
chr6 (265-336)||(15057105-15057177)
[»] chr3 (5 HSPs)
chr3 (262-332)||(26960932-26961003)
chr3 (281-332)||(53299822-53299873)
chr3 (281-319)||(53299719-53299757)
chr3 (280-317)||(30675008-30675045)
chr3 (300-332)||(48342310-48342342)
[»] chr5 (3 HSPs)
chr5 (281-332)||(5998542-5998593)
chr5 (281-335)||(34394678-34394732)
chr5 (256-332)||(20986548-20986625)
[»] chr8 (2 HSPs)
chr8 (265-333)||(3647478-3647547)
chr8 (296-332)||(10591487-10591523)
[»] chr4 (5 HSPs)
chr4 (252-332)||(29821311-29821392)
chr4 (272-317)||(13837849-13837895)
chr4 (265-317)||(13837989-13838042)
chr4 (296-332)||(11392392-11392428)
chr4 (269-332)||(35297469-35297533)
[»] chr7 (8 HSPs)
chr7 (281-336)||(16648905-16648960)
chr7 (281-336)||(17623266-17623321)
chr7 (281-320)||(33491196-33491235)
chr7 (259-336)||(16648783-16648861)
chr7 (259-336)||(17623144-17623222)
chr7 (281-317)||(6980966-6981002)
chr7 (296-332)||(32315735-32315771)
chr7 (271-315)||(48583288-48583332)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 113 - 336
Target Start/End: Complemental strand, 1356212 - 1355983
Alignment:
Q  113 gaatattaagagaatcttttgccatctaactaagaggtaaatttcctaccttagtaatannnnnnnnn--acattcatgaatccaagaattaaatacaaa 210  Q
    |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||           ||||||||||||||||||||||||||||||    
T  1356212 gaatattaagagcatcttttgccatctaactaagaggtaaattttcttccttagtaatatttttttttttacattcatgaatccaagaattaaatacaaa 1356113  T
Q  211 atagcatagttacagattagaatttcttctacccaccaacaaattttcggaaaacacttaggtgacatt-tggtgtcaatgtcatct---gacattggcc 306  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||||||||||| || |||||||||  ||||||||||||||||   ||||||||||    
T  1356112 atagcataggtagagattagaatttcttctacccaccaacacattttcggaaaacatttgggtgacattggggtgtcaatgtcatctgacgacattggcc 1356013  T
Q  307 aaccacaatgtcataaatgtacaaaatgac 336  Q
    ||||||||||||| || |||||||||||||    
T  1356012 aaccacaatgtcacaagtgtacaaaatgac 1355983  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1356250 - 1356208
Alignment:
Q  18 ttatatctgttcttgaatttcttatttgcacttcagttgaata 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1356250 ttatatctgttcttgaatttcttatttgcacttcagttgaata 1356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 1363064 - 1362995
Alignment:
Q  28 tcttgaatttcttatttgcacttcagttgaatacatatatgtcaactggtttctaattttgtttgttttctt 99  Q
    |||||||||||||| ||||||||||| ||||||  ||| || ||||||||||||||||||||||| ||||||    
T  1363064 tcttgaatttcttagttgcacttcaggtgaata--tatttgacaactggtttctaattttgtttgctttctt 1362995  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 532157 - 532221
Alignment:
Q  254 ttttcggaaaacacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    |||| ||| ||||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||    
T  532157 ttttgggacaacacttgggtgacatggtggtgccaatgtcatgtgacattggccaaccacaatgt 532221  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 1362892 - 1362856
Alignment:
Q  186 catgaatccaagaattaaatacaaaatagcatagtta 222  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1362892 catgaatccaagaattatatacaaaatagcatagtta 1362856  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 5095843 - 5095807
Alignment:
Q  296 tgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5095843 tgacattggccaaccacaatgtcacaaatgtacaaaa 5095807  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 18182498 - 18182562
Alignment:
Q  265 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtac 328  Q
    ||||| ||||||||| || || ||||||||| |||||||||||||||||||||||| || |||||    
T  18182498 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcacaagtgtac 18182562  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 317
Target Start/End: Complemental strand, 3094337 - 3094282
Alignment:
Q  263 aacacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    |||||||||| |||||| ||||||||||||||| ||||||||| |||| |||||||    
T  3094337 aacacttaggcgacattgtggtgtcaatgtcatgtgacattggtcaactacaatgt 3094282  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 332
Target Start/End: Complemental strand, 28606639 - 28606565
Alignment:
Q  259 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    ||||||||||| ||||||||| || || ||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  28606639 ggaaaacacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgtcttaagtgtacaaaa 28606565  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 15057177 - 15057105
Alignment:
Q  265 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 336  Q
    ||||| ||||||||| || |||||||||||| |||||||||||||||| ||| ||| || |||||||||||||    
T  15057177 cactttggtgacattggggtgtcaatgtcatgtgacattggccaaccaaaatatcacaagtgtacaaaatgac 15057105  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 26961003 - 26960932
Alignment:
Q  262 aaacacttaggtgacattt-ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||| |||||||||  |||||||||||||| |||||||||||||||||||||||| || |||| ||||    
T  26961003 aaacacttgggtgacattgaggtgtcaatgtcatgtgacattggccaaccacaatgtcacaagtgtagaaaa 26960932  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 53299873 - 53299822
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||  |||||||||||||||||||||||| || |||||||||    
T  53299873 ggtgtcaatgtcacgtgacattggccaaccacaatgtcacaagtgtacaaaa 53299822  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 53299719 - 53299757
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtca 319  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  53299719 ggtgtcaatgtcacatgacattggccaaccacaatgtca 53299757  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 30675045 - 30675008
Alignment:
Q  280 tggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  30675045 tggtgtcaatgtcatgtgacattagccaaccacaatgt 30675008  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 48342342 - 48342310
Alignment:
Q  300 attggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||||||||| ||||||||||||    
T  48342342 attggccaaccacaatgtcacaaatgtacaaaa 48342310  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 332
Target Start/End: Original strand, 5998542 - 5998593
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||| ||||||||| |||||||||||||| || |||||||||    
T  5998542 ggtgtcaatgtcatgtgacattggtcaaccacaatgtcagaagtgtacaaaa 5998593  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Original strand, 34394678 - 34394732
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatga 335  Q
    |||| |||||| || ||||||||| |||||||||||||| || ||||||||||||    
T  34394678 ggtgccaatgtgatgtgacattggtcaaccacaatgtcacaagtgtacaaaatga 34394732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 332
Target Start/End: Complemental strand, 20986625 - 20986548
Alignment:
Q  256 ttcggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||| ||||||| ||||||||| || || ||||||||| ||| |||| ||||| |||||||||||| ||| |||||    
T  20986625 ttcggataacactttggtgacattgggatgccaatgtcatgtgatattgaccaactacaatgtcataagtgtgcaaaa 20986548  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 3647547 - 3647478
Alignment:
Q  265 cacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaat 333  Q
    ||||| ||||||||| || || ||||||||| ||||||||||||||||||||| || || ||||||||||    
T  3647547 cacttgggtgacattggggtgccaatgtcatgtgacattggccaaccacaatgacacaagtgtacaaaat 3647478  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 10591487 - 10591523
Alignment:
Q  296 tgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  10591487 tgacattagccaaccacaatgtcataaatgtataaaa 10591523  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 29821311 - 29821392
Alignment:
Q  252 aattttcggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    ||||| |||||||||||| ||||||| | || || |||||||||  ||| ||||||||||||||||||| || |||||||||    
T  29821311 aatttacggaaaacacttgggtgacaatggggtgccaatgtcatgggaccttggccaaccacaatgtcacaagtgtacaaaa 29821392  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 13837849 - 13837895
Alignment:
Q  272 gtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  13837849 gtgacattgtggtgccaatgtcatgtgacattggccaaccacaatgt 13837895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 13838042 - 13837989
Alignment:
Q  265 cacttaggtgacatt-tggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    |||||| |||||||| ||||  ||||||||||||||||||| ||||||||||||    
T  13838042 cacttatgtgacattgtggttccaatgtcatctgacattggtcaaccacaatgt 13837989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 11392428 - 11392392
Alignment:
Q  296 tgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||||||||||||| || |||||||||    
T  11392428 tgacattggccaaccacaatgtcacaagtgtacaaaa 11392392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 35297469 - 35297533
Alignment:
Q  269 taggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||| | |||||| ||| |||||||| ||||||||||| ||| || |||||||||    
T  35297469 taggtgacatttgggtttcaatgacatgtgacattgaccaaccacaatatcacaagtgtacaaaa 35297533  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 16648960 - 16648905
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 336  Q
    |||| ||||||||| |||||||||| ||||||||| ||| || |||||||||||||    
T  16648960 ggtgccaatgtcatgtgacattggcaaaccacaatttcacaagtgtacaaaatgac 16648905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 17623321 - 17623266
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 336  Q
    |||| ||||||||| |||||||||| ||||||||| ||| || |||||||||||||    
T  17623321 ggtgccaatgtcatgtgacattggcaaaccacaatatcacaagtgtacaaaatgac 17623266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 33491196 - 33491235
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgtcat 320  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  33491196 ggtgccaatgtcatgtgacattggccaaccacaatgtcat 33491235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 16648783 - 16648861
Alignment:
Q  259 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 336  Q
    ||||||||||| ||||||||  || |||||||||||| ||||||||| |||||||||| ||| ||  ||| ||||||||    
T  16648783 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaagcgtataaaatgac 16648861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 17623144 - 17623222
Alignment:
Q  259 ggaaaacacttaggtgacatttgg-tgtcaatgtcatctgacattggccaaccacaatgtcataaatgtacaaaatgac 336  Q
    ||||||||||| ||||||||  || |||||||||||| ||||||||| |||||||||| ||| ||  ||| ||||||||    
T  17623144 ggaaaacacttgggtgacatcgggatgtcaatgtcatgtgacattggtcaaccacaatatcacaagcgtataaaatgac 17623222  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 6981002 - 6980966
Alignment:
Q  281 ggtgtcaatgtcatctgacattggccaaccacaatgt 317  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  6981002 ggtgccaatgtcatgtgacattggccaaccacaatgt 6980966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 32315735 - 32315771
Alignment:
Q  296 tgacattggccaaccacaatgtcataaatgtacaaaa 332  Q
    |||||||||||||||||||||||| || |||||||||    
T  32315735 tgacattggccaaccacaatgtcacaattgtacaaaa 32315771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 48583288 - 48583332
Alignment:
Q  271 ggtgacatttggtgtcaatgtcatctgacattggccaaccacaat 315  Q
    |||||||||  ||| ||||||||| ||||||||||||||||||||    
T  48583288 ggtgacattatgtgccaatgtcatgtgacattggccaaccacaat 48583332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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