View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20108_low_9 (Length: 339)
Name: NF20108_low_9
Description: NF20108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20108_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 1356592 - 1356406
Alignment:
| Q |
40 |
taatcaatgttagcctg-ttatatttatttttcataaacgaaatgaaaattattagacacacatataagtaaagaaattagaattcaaaccatgaggttt |
138 |
Q |
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| T |
1356592 |
taataaatgttagcttggttatatttatttttcataaacgaaatgaaaattattagacacacatataagtaaagaaatcaggattcaaaccatgaggttt |
1356493 |
T |
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| Q |
139 |
gacttaaaaaattcaacattcttagcggttgaattatgatttgtgaacaatgtacttgtttaacttcgggctagttatgttgtaggt |
225 |
Q |
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| T |
1356492 |
gacctaaaaaattcaacattcttaacggttgaattatgacttgtgaacaatgtacttgtttaacttcgggctaattatgttgtaggt |
1356406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 1356405 - 1356362
Alignment:
| Q |
263 |
agggaccatttacaatttgtttaaaagtttagagagccaattaa |
306 |
Q |
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| T |
1356405 |
agggaccatttacaatttgtttaaaagtttagagagccaattaa |
1356362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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