View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_high_1 (Length: 309)
Name: NF20109_high_1
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 13870215 - 13870511
Alignment:
| Q |
1 |
ctacctgtctcctccgacttccaccaccccctatcctctcctcccactcttctccaattcctaattacctccaaaagactattgcacaaaatggtttccc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13870215 |
ctacctgtctcctccgacttccaccaccacctatcctctcctcccactcttctccaattcccaattacctccaaaagactattgcacaaaatggtttccc |
13870314 |
T |
|
| Q |
101 |
acacaaagagttttcttcgtcaaaccaaagaccaatagcctacttcccagttaagttaattgttgcattgaactgattccggccaggaagagcatcctta |
200 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13870315 |
acaca--gagttttcttcgtcaaaccaaagacaaatagcctacttcccagttaagttgattgttccattgaactgattccggccaggaagagcatcctta |
13870412 |
T |
|
| Q |
201 |
acggcgagagtgttgtcatccacggtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaacagagtccttcatctctct |
299 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
13870413 |
acggtgagagtgttgtcatccacagtaacctcaacttcctccttcctgacacctctgaacacatacacactcaaaaacaacagagtcctccgtctctct |
13870511 |
T |
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