View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_1 (Length: 577)
Name: NF20109_low_1
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 561
Target Start/End: Original strand, 49034672 - 49035222
Alignment:
| Q |
16 |
gtaattggggacaaggtaatatctgaaggagaatggatctcgttgaatggatccacaggtgaggtgattctaggaaagcaaacactttctcctccggcat |
115 |
Q |
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| T |
49034672 |
gtaattggggacaaggtaatatctgaaggagaatggatctcgttgaatggatccacaggtgaggtgattctaggaaagcaaacactttctcctccggcat |
49034771 |
T |
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| Q |
116 |
taagtgaggatttggaaactttcatgtcttgggctgatcaaataaggaagctgaaggtgagctgaatcaaaaca-ttcattcatgtttggtaatttcact |
214 |
Q |
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| T |
49034772 |
taagtgaggatttggaaactttcatgtcttgggctgatcaaataaggaagctgaaggtgagctgaatcaaaacatttcattcatgtttggtaatttcact |
49034871 |
T |
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| Q |
215 |
catatcattgttgtgtatcaggttttggcaaattgtgacacacctgaagatgcaataac-agctagaagaaa--tggt-gcacaaggaattggactttgc |
310 |
Q |
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| T |
49034872 |
catatcattgttgtgtatcaggttttggcaaattgtgacacacctgaagatgcaataacaagctagaagaaaataggtggcacaaggaattggactttgc |
49034971 |
T |
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| Q |
311 |
aggactgaacacatggtacaaataatattcaactccttgttataactaactaaaacgtgtgagtgcattaaaatttaaaaggcttgtattgtagttttgt |
410 |
Q |
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| T |
49034972 |
aggactgaacacatggtacaaataatattcaactccttgttataactaactaaaacgtgtgagtgcattaaaatttaaaaggcttgtattgtagttttgt |
49035071 |
T |
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| Q |
411 |
tataacaagttttagcattgcttttcgaaatnnnnnnnnnnnncactcatgtagagcgagcataagataaaaatgatcctttttgtatgctataagtttg |
510 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49035072 |
tataacaagttttagcattgcttttcgaaataaaaagaaaaaacactcatgtagagcgagcataagataaaaatgatcctttttgtatgctataagtttg |
49035171 |
T |
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| Q |
511 |
gtgtgttttagttttttgcttcagatgaaaggctaaaggctgtgagaagga |
561 |
Q |
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| T |
49035172 |
gtgtgttttagttttttgcttcagatgaaaggctaaaggctgtgagaagga |
49035222 |
T |
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