View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20109_low_2 (Length: 437)
Name: NF20109_low_2
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 49629556 - 49629959
Alignment:
| Q |
16 |
atccaacaattaggttcggtctaacagaaggggcaaacaacgagattgagtctagcggaagggttagattccaacaaccatttgtcaatatttcgaattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
49629556 |
atccaacaattaggttcggtctaacagaaggggcaaacaacgagattgagtctagcagaagggttagattccaacaacctcgtaccaata-ttcgaattc |
49629654 |
T |
|
| Q |
116 |
cacctcaaataggattaccctatatttgaaagagaataaaaacaaatattaactacttcacttcatatacagttttaacaaaatctattttaaaaaatcc |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49629655 |
cacctcaaataggattaccctctatttgaaagagaataaaaacaaatattaactacttcacttcatatacagttttaacaaaatctattttaaaaaatcc |
49629754 |
T |
|
| Q |
216 |
agctaattcagagtcatatgtgctagcatacattccccaaacacacacgtagatcaatcaacatgagcatacaataatgactataatgannnnnnnnnna |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49629755 |
agctaattcagagtcatatgtgctagcatacattccccaaacacacacgtagatcaatcaacatgagcatacaataatgactataatga-ttttttttta |
49629853 |
T |
|
| Q |
316 |
caagataatgataacaaagtgtttgtgtctttagatgaacatttgacaaacgtaattttaaaaaagttatttgtaaaactaatttagttaaaattgagtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49629854 |
caagataatgataacaaagtgtttgtgtctttagatgaacatttgacaaacgtaattttaaaaaagttatttgtaaaactaatttagttaaaattgagtt |
49629953 |
T |
|
| Q |
416 |
tgaagt |
421 |
Q |
| |
|
|||||| |
|
|
| T |
49629954 |
tgaagt |
49629959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University