View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_3 (Length: 340)
Name: NF20109_low_3
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 15807351 - 15807655
Alignment:
| Q |
15 |
acactgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807351 |
acactgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactc |
15807450 |
T |
|
| Q |
115 |
gtcatgctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggat |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807451 |
gtcatgctattctcagctttcccaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggat |
15807550 |
T |
|
| Q |
215 |
tctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807551 |
tctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgca |
15807650 |
T |
|
| Q |
315 |
aaatt |
319 |
Q |
| |
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||||| |
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| T |
15807651 |
aaatt |
15807655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 15793933 - 15794237
Alignment:
| Q |
15 |
acactgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactc |
114 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||||||||||| | ||||||||||| || | || |||| |||||||| |||||||||||| |
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| T |
15793933 |
acactgcaccataccataccttttctcagtgtcactccaattgaactcacccattgcccaattgggattgccttctgtcgtcacttttcgtatcaaactc |
15794032 |
T |
|
| Q |
115 |
gtcatgctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggat |
214 |
Q |
| |
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||||| ||||||||| |||| |||||||||| ||||| |||||| |||| ||||||||||||||||||||||| || || ||||||||| ||||||| |
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| T |
15794033 |
atcatgttattctcagatttcgcaagttctgtcgagtctttaacgattttagatccggttacattccatgatggagttacaataactcttcccgagggat |
15794132 |
T |
|
| Q |
215 |
tctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgca |
314 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||| || |
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| T |
15794133 |
tctggttagtgtaacccatgatgcataaatcataccatatcatagctgagacactgttgggacaatattttgcaatatctctaacaacagtgttgataca |
15794232 |
T |
|
| Q |
315 |
aaatt |
319 |
Q |
| |
|
||||| |
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|
| T |
15794233 |
aaatt |
15794237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 15801732 - 15802028
Alignment:
| Q |
15 |
acactgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactc |
114 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| |||||||| | ||||||||| | |||| | | |||||||||||||||||||||||||| |
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| T |
15801732 |
acactgcaccaaaccataccttttctcggtgtcactccaaatgaactcacccgttgcccaaacgggactggattctgtagtcactttgcgtatcaaactc |
15801831 |
T |
|
| Q |
115 |
gtcatgctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggat |
214 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| || || |||| |||||| | || |
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| T |
15801832 |
atcatgttattctcagctttcccaagttctgttgagtccttaacgtttctggatccggttatattccatgatggtgttacaataacttttcctgtcgtat |
15801931 |
T |
|
| Q |
215 |
tctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgat |
311 |
Q |
| |
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||||||| || |||||||||| |||||||||||||||||| | |||||| |||||||| |||||| || || |||||||||| |||||||||||| |
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| T |
15801932 |
tctggtttgtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgat |
15802028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 15815212 - 15815516
Alignment:
| Q |
15 |
acactgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactc |
114 |
Q |
| |
|
|||||||||| | ||||||||||| || ||||||||||||| |||||| | |||||||||| | | ||| ||| |||||| | | ||||||| || |
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|
| T |
15815212 |
acactgcacccaaccataccttttctcggtgtcactccaatcgaactctcccactgcccaattggaattagcttctgccgtcactcttcctatcaaattc |
15815311 |
T |
|
| Q |
115 |
gtcatgctattctcagctttcacaagttctgttgagtccttaacgtttttggatccggttacattccatgatggttctagaaaaactcttcctgagggat |
214 |
Q |
| |
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||||| || | |||||| ||||||| ||||||||||| |||||||| |||||||| |||||||||||| | | ||| | ||||||| | || |
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| T |
15815312 |
ctcatgtcatctactgctttctcaagttcagttgagtccttcgtgtttttggttccggttaaattccatgatggggtaacagaaatttttcctgatgtat |
15815411 |
T |
|
| Q |
215 |
tctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatgca |
314 |
Q |
| |
|
| |||| || |||||| |||| |||| ||||||||||| ||||||||||| | ||||||||| ||| || || |||||| ||||| |||||| || |
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| T |
15815412 |
tatggtcagaataaccgatgacacatatgtcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaacagcagcgttgataca |
15815511 |
T |
|
| Q |
315 |
aaatt |
319 |
Q |
| |
|
||||| |
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|
| T |
15815512 |
aaatt |
15815516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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