View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_4 (Length: 318)
Name: NF20109_low_4
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 18852801 - 18853097
Alignment:
| Q |
18 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18852801 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacattctttaattctagatcaaatctggtatctggatgg |
18852900 |
T |
|
| Q |
118 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18852901 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaatc |
18853000 |
T |
|
| Q |
218 |
aacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaagaataatctac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
18853001 |
aacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaaaatctatatcaagaaaaatctac |
18853097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 50013982 - 50014264
Alignment:
| Q |
18 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatgg |
117 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
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| T |
50013982 |
agaaactaccatatgctacaaaccacaaaagtaatatggaggaggtgaaataaagatcattacatcttttaattctagatcaaatctggtatctggacgg |
50014081 |
T |
|
| Q |
118 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
50014082 |
tccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaacc |
50014181 |
T |
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| Q |
218 |
aacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
303 |
Q |
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|||||||||||| |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50014182 |
aacttcaaaattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatctatatcaa |
50014264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 18841742 - 18842023
Alignment:
| Q |
18 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatgg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18841742 |
agaaactaccatatgctacaaaccacaaaagtactatggaggaggtgtaataaagatccttacatcttttaattctagatcaaatctggtatctggatgg |
18841841 |
T |
|
| Q |
118 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||| |
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| T |
18841842 |
tccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctac----aaaatt |
18841937 |
T |
|
| Q |
218 |
aacttcaaaatttgccacaatat---tatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
303 |
Q |
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| ||||||| |||| ||||| | |||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
18841938 |
a---gcaaaattagccataatatacatgcatgattcgatttttatggttttctttatgtaaaaccatgtccacagaagatctatatcaa |
18842023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 44111054 - 44111336
Alignment:
| Q |
18 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatgg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
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| T |
44111054 |
agaaactaccatatgctacaaaccacaaaagtaatatggaggaggtgaaataaagatcattacatcttttaattctagatcaaatctggtatctggacgg |
44111153 |
T |
|
| Q |
118 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
44111154 |
tccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaacc |
44111253 |
T |
|
| Q |
218 |
aacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
303 |
Q |
| |
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|||||||||||| |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44111254 |
aacttcaaaattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatctatatcaa |
44111336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 51298966 - 51299250
Alignment:
| Q |
18 |
agaaactaccatatactacaaaccacaaaagtgctatggaggaggtgaaataaagaccattacatcctttaattctagatcaaatctggtatctggatgg |
117 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||| || |
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| T |
51298966 |
agaaactacgatatgttacaaaccacaaaagtgctatggaggaggtaaaataaagatcattacatcttttaattctagatcgaatctggtatctggacgg |
51299065 |
T |
|
| Q |
118 |
tccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
51299066 |
tccgaaccatatctattcattgcttcagcatatgtaagcctagggaaaggatttggtaattccacacccttaatttcaagaaaaacctgcaataaaaacc |
51299165 |
T |
|
| Q |
218 |
aacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
303 |
Q |
| |
|
|||||||||||| |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51299166 |
aacttcaaaattagccataata-tacatgattcgatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
51299250 |
T |
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