View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_6 (Length: 295)
Name: NF20109_low_6
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 13515411 - 13515699
Alignment:
| Q |
1 |
ttccaagtaactatatgtctgtttggcatttcatcgaacaacttgcgtgcttcagtgatgacactgcatttgatgtaaccatcaatgagcttgtgaccaa |
100 |
Q |
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| T |
13515411 |
ttccaagtaactatatgtctgttgggcatttcatcgaacaacttgcgtgcttcagtgatgacgctgcatttgatgtaaccatcaatgagcttgtgaccaa |
13515510 |
T |
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| Q |
101 |
agaatgaaaacaaggaaccggatttgaggatgtgggtgtgaagtgatttgagggttgttaaggattttttgtttgtgcattgtgcaatgagggaagtgta |
200 |
Q |
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| T |
13515511 |
agaatgaaaacaaggaaccggatttgaggatgtgggtgtgaagtgatttgagggttgttaaggattttttgtttgtgaattgtgcaatgagggaagtgta |
13515610 |
T |
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| Q |
201 |
acaattcatatttgcatgctacaatatgattgttttatgttttttattgccacgatggtgagtgaggttttctctatgttcatctctct |
289 |
Q |
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| T |
13515611 |
acaattcatatttgcatgctacaatatgattgttttatgttttttattgccacgatggtgagtgaggttttctctatgttcatgtctct |
13515699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21773490 - 21773208
Alignment:
| Q |
1 |
ttccaagtaactatatgtctgtttggcatttcatcgaacaacttgcgtgcttcagtgatgacactgcatttgatgtaaccatcaatgagcttgtgaccaa |
100 |
Q |
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| T |
21773490 |
ttccaagtaactatgtgtctgttgggcatttcatcgaacaacttgcgtgcttcagtgatgacgctgcatttgatgtaaccatcaatgagcttgtgaccaa |
21773391 |
T |
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| Q |
101 |
agaatgaaaacaaggaaccggatttgaggatgtgggtgtgaagtgatttgagggttgttaaggattttttgtttgtgcattgtgcaatgagggaagtgta |
200 |
Q |
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| T |
21773390 |
agaatgaaaacaaggaaccggatttgaggatatgggtgtgaagtgatttgagggttgttaaggattttttgtttgtgcattgtgcaatgagggaagtgta |
21773291 |
T |
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| Q |
201 |
acaattcatatttgcatgctacaatatgattgttttatgttttttattgccacgatggtgagtgaggttttctctatgttcat |
283 |
Q |
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| T |
21773290 |
acaattcatatttgcatgctacaatacgattgttttatgttttttattgccaccattgtgagtgaggttttctctatgttcat |
21773208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 13601543 - 13601622
Alignment:
| Q |
144 |
tgatttgagggttgttaaggattttttgtttgtgcattgtgcaatgagggaagtgtaacaattcatatttgcatgctaca |
223 |
Q |
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| T |
13601543 |
tgatttgagggtagttaaggattttttgtgtgtgcattgtgcaatgagggaagtgtaagaatacatatttccatgctaca |
13601622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 13601644 - 13601694
Alignment:
| Q |
80 |
catcaatgagcttgtgaccaaagaatgaaaacaaggaaccggatttgagga |
130 |
Q |
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| T |
13601644 |
catcaatgagcttgtgaccaaagaatgagaacaagaaaccagacttgagga |
13601694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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