View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_7 (Length: 272)
Name: NF20109_low_7
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 5415180 - 5414926
Alignment:
| Q |
18 |
cattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctaccagctattttcaatatccaacaaaagt |
117 |
Q |
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| T |
5415180 |
cattgttaagattcacaataacagcagcacaacccgcaaatatcatcatgtatgttcccaccacttctgctaccagctattttcaatatccaacaaaagt |
5415081 |
T |
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| Q |
118 |
aaannnnnnngtcatttcaaatcaaattttcaagctctatataaatgaaattaaaatgatccaaaagaagactaaaaacttaatgaatgccttctagaga |
217 |
Q |
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| T |
5415080 |
aaatttttttgtcatttcaaatcaaattttcaagctctatataaatgaaattaaaatgatccaaaagaagactaaaaacttaatgaatgccttctagaga |
5414981 |
T |
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| Q |
218 |
atgaaataaaagttaccttcttgagaaggggcacagagtctttgatgcctgattc |
272 |
Q |
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| T |
5414980 |
atgaaataaaagttaccttcttgagaaggggcacagagtctttgatgcctgattc |
5414926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 5396745 - 5396660
Alignment:
| Q |
18 |
cattgttaagattcacaataacagcagcacaaccagcaaatatcatcatgtatgttcccaccacttctgctaccagctattttcaa |
103 |
Q |
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|||||||||| ||||| | ||||||||||| ||||||||||||| | | |||||||||||||||||||||||| |||| ||||| |
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| T |
5396745 |
cattgttaaggttcaccaccacagcagcacatccagcaaatatcaagaagaatgttcccaccacttctgctaccaactatattcaa |
5396660 |
T |
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