View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20109_low_8 (Length: 250)
Name: NF20109_low_8
Description: NF20109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20109_low_8 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 32940758 - 32940520
Alignment:
| Q |
12 |
atgaacacaatgaagatattataattcatacatgctttaacaaaagtttaagtaacgatagtaatttaagaagaaaaaataaataaatctgtccataatt |
111 |
Q |
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| T |
32940758 |
atgaacacaatgaagatattataactcatacatgcattaacaaaagtttaagtaacgatagtaatttaagaagaaaaaataaataaatctgtccataatt |
32940659 |
T |
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| Q |
112 |
caagaacatatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattataaaactcaacatcgttgccaatgtga |
211 |
Q |
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| T |
32940658 |
caagaacatatattatttatttcttacgaaacttgtaaagccaagatgtaatatttaattaataaccttattataaaactcaacatcgttgccaatgtga |
32940559 |
T |
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| Q |
212 |
agaagatctaagttctgatcaaaatggtagacatgaaca |
250 |
Q |
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| T |
32940558 |
agaagatctaagttctgatcaaaatggtagacatgaaca |
32940520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 32910514 - 32910442
Alignment:
| Q |
176 |
accttattataaaactcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatgaa |
248 |
Q |
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| T |
32910514 |
accttattaaaaaactcaacatctttgccaatatgaagaagatctaagttctgatcaaaatggtaaacatgaa |
32910442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 32932355 - 32932296
Alignment:
| Q |
187 |
aaactcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatg |
246 |
Q |
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| T |
32932355 |
aaactcaatatcattgccaatgtgaagaagatctaagttctggtcaaaatggtaaacatg |
32932296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 32921903 - 32921833
Alignment:
| Q |
176 |
accttattataaaactcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatg |
246 |
Q |
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| T |
32921903 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatg |
32921833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 32897550 - 32897491
Alignment:
| Q |
191 |
tcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatgaaca |
250 |
Q |
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| T |
32897550 |
tcaagatctttgccaatgtgaacaagatctaaattctgatcaaaatgaaaaacatgaaca |
32897491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 11822423 - 11822353
Alignment:
| Q |
176 |
accttattataaaactcaacatcgttgccaatgtgaagaagatctaagttctgatcaaaatggtagacatg |
246 |
Q |
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| T |
11822423 |
accttattataaaactcaacatctttaccaacatgaagaagatttaagttttgatcaaaatggtaaacatg |
11822353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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