View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2010_high_2 (Length: 682)
Name: NF2010_high_2
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 44262568 - 44262956
Alignment:
| Q |
10 |
aagaatattggtttgttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatct |
109 |
Q |
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| T |
44262568 |
aagaatattggtttgttatgccattaattgatgggatgtatgtgtatctttaagtcccatttcagttatcggatggataggaatagaattactctaatct |
44262667 |
T |
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| Q |
110 |
tcgcaagtagttatcgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgct |
209 |
Q |
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| T |
44262668 |
tcgcaagtagttatcgaatggataagtatagaatacatggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgtt |
44262767 |
T |
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| Q |
210 |
gttgttctgtttgtgtagttaagcgattta---------cagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggt |
300 |
Q |
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| T |
44262768 |
gttgttctgtttgtgtagttaagcgatttacagagcttgcagcagagttttgggttcaatatagtaaggaaggagatctaaggagaggagctttggaggt |
44262867 |
T |
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| Q |
301 |
ttaatagcatattggtttacaccaagtctgttggtgtgttttgctagttgtaagaataaactaattaatttagttgaggagcaccaggc |
389 |
Q |
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| T |
44262868 |
taaatagcatattggtttacaccaagtctgttggtgtgttttgctagttgtaagaataaactaattaatttcattgaggagcacaaggc |
44262956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 503 - 666
Target Start/End: Original strand, 44262951 - 44263114
Alignment:
| Q |
503 |
caaggcagaattattggagtagtggtggtcattggtgtggcttcttgtttgatcagagagtgcgacaaatcctgtcgcctccatatttgtttcaagggat |
602 |
Q |
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| T |
44262951 |
caaggcagaattattggagtagtggtagtcattggtgtggcttcttgtttgatcagagagtgcgacaaatcctgtcgtctccatatttgtttcaagggat |
44263050 |
T |
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| Q |
603 |
gaagtcgtccattaagaaagcagtgaaactatgatcatttgaagctctaatgaaatgcttaatg |
666 |
Q |
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| T |
44263051 |
gaagtcgtccattaagaaagcagtgaaactatgatcatttgaagctctaatgaaatgcttaatg |
44263114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 528
Target Start/End: Original strand, 44259700 - 44259738
Alignment:
| Q |
490 |
aagttgtaatagtcaaggcagaattattggagtagtggt |
528 |
Q |
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| T |
44259700 |
aagttgtaatagtcaaggcagaattattggagtagtggt |
44259738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 662
Target Start/End: Original strand, 44260137 - 44260183
Alignment:
| Q |
616 |
aagaaagcagtgaaactatgatcatttgaagctctaatgaaatgctt |
662 |
Q |
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| T |
44260137 |
aagaaagcagtgaaactatgaccatttgaggctctaatgaaatgctt |
44260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 148 - 344
Target Start/End: Original strand, 56165239 - 56165447
Alignment:
| Q |
148 |
ggcctgctttcattcctacaagcattaggacagtctggtttggcatgactactgcaattgctgttgttctgtttgtgtagttaagcgatttacag----- |
242 |
Q |
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|||||| |||||||||||| ||||||||||| | ||| |||| ||||| |||| ||| || ||||| |||| ||| ||||||||||| |||| |
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| T |
56165239 |
ggcctggtttcattcctaccagcattaggaccatttggattggtgtgactgctgcgattcctcttgttttgttcgtgcggttaagcgattgacagagctt |
56165338 |
T |
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| Q |
243 |
----cagagttttgggttcaatatagtaaggaaggagatctaa----ggagaggagctttggaggtttaatagcatattggtttacaccaagtctgttgg |
334 |
Q |
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| T |
56165339 |
gcagcagaattttgggttcaatatagtaaggaaagagatttaattaagaagtggaactttggaggtt-aatagcatattggtttacaccaagtctgttgg |
56165437 |
T |
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| Q |
335 |
tgtgttttgc |
344 |
Q |
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|||||||||| |
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| T |
56165438 |
tgtgttttgc |
56165447 |
T |
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