View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2010_high_5 (Length: 527)

Name: NF2010_high_5
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2010_high_5
NF2010_high_5
[»] chr1 (1 HSPs)
chr1 (31-527)||(33904742-33905227)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 31 - 527
Target Start/End: Complemental strand, 33905227 - 33904742
Alignment:
Q  31 tttgcttgtgctctttttctacttctttctcttttcaatttggaatggagtggctattatatttgcaattgtattccaaaatcaagtctacaagactata 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  33905227 tttgcttgtgctctttttctacttctttctcttttcaatttggaatggagtggctattatatttgcaattgtattccaacatcaagtctacaacactata 33905128  T
Q  131 tgtttgaggtattgtctattttagaccttatgtgagtcattattatagtttgtttgtaaaagatgtctcgttagagtgatgggtcgtttataaattaatt 230  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||      ||||||||||| ||    
T  33905127 tgtttgaggtgttgtctattttggaccttatgcgagtcattat---agtttgtttgtaaaagatgtctcgttagagtgat------tttataaattactt 33905037  T
Q  231 ttaaccttgatttttaagtaatgttagactttctagtgtacctgataggtaaccctcaacagatgctaaggaagtaagggtctgtcattattgtacttca 330  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33905036 ttaactttgatttttaagtaatgttagactttctagtgtacctgatcggtaaccctcaactgatgctaaggaagtaagggtctgtcattattgtacttca 33904937  T
Q  331 ttacattgtatatagatctagaaccacttaattatattgatttctctctttcttcaaaataattcttcagtttgctattnnnnnnnntaataacaataaa 430  Q
    ||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  33904936 ttacattg--tgtagatctagaaccacttaattatatttatttctctctttcttcaaaataattcttcagtttgctattaaaacaaataataacaataaa 33904839  T
Q  431 taaagggtatgccaaccatcgtgtgtggcttagaccttatttccatatacgacgccaatgaccttgtacggacatgaagacaacgatgagtgttctt 527  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  33904838 taaagggtatgtcaaccatcgtgtgtggcttagaccttgtttccatagacgatgccaatgaccttgtacggacgtgaagacaacgatgagtgttctt 33904742  T

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