View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2010_high_9 (Length: 430)

Name: NF2010_high_9
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2010_high_9
NF2010_high_9
[»] chr5 (4 HSPs)
chr5 (11-214)||(27261181-27261384)
chr5 (206-404)||(27265729-27265927)
chr5 (273-337)||(12124095-12124159)
chr5 (33-103)||(21941401-21941471)
[»] chr7 (2 HSPs)
chr7 (273-341)||(35479038-35479106)
chr7 (277-376)||(24578442-24578544)
[»] chr4 (2 HSPs)
chr4 (275-339)||(3797255-3797321)
chr4 (275-339)||(4216380-4216446)
[»] chr6 (1 HSPs)
chr6 (273-339)||(9367628-9367694)
[»] chr2 (3 HSPs)
chr2 (271-400)||(6811443-6811572)
chr2 (16-102)||(27546908-27546994)
chr2 (271-339)||(38871290-38871358)
[»] chr1 (2 HSPs)
chr1 (273-341)||(20619978-20620045)
chr1 (318-366)||(19030839-19030887)
[»] chr3 (3 HSPs)
chr3 (277-366)||(45294775-45294867)
chr3 (273-310)||(13750714-13750751)
chr3 (322-366)||(13423269-13423313)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 27261181 - 27261384
Alignment:
Q  11 cacagagaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcacttttgtact 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27261181 cacagagaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttaaaaaatgattgtccaattcctctcacttttgtact 27261280  T
Q  111 atgggcaccacattatcgagataatgcacatcccgaagattatagatgtatccatatgatgattgtttataatgaactcagtcggatggcatttaatgaa 210  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  27261281 atgggcaccacattatcgagataatgtacatcctgaagattatagatgtatccatatgatgattgtttataatgaacttagtcgggtggcatttaatgaa 27261380  T
Q  211 ataa 214  Q
    ||||    
T  27261381 ataa 27261384  T

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Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 206 - 404
Target Start/End: Original strand, 27265729 - 27265927
Alignment:
Q  206 atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttacggatgataagaaggttgaagatggagttaagattga 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  27265729 atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttagtgatgataagaaggttgaagatggagttaagattga 27265828  T
Q  306 agttgatagccttggacttgatgattgtagcatagatcattgggatgattagttgaaatgtcaatcattaaagaattaaacacatattatatataatgc 404  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27265829 agttgatagccttggacttgatgattgtagcatggaccattgggatgattagttgaaatgtcaatcattaaagaattaaacacatattatatataatgc 27265927  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 12124095 - 12124159
Alignment:
Q  273 tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagca 337  Q
    ||||||||| |||||||||||||| ||| || |||||||||| |||||| ||||| |||||||||    
T  12124095 tgataagaatgttgaagatggagtaaaggtttaagttgatagtcttggaattgattattgtagca 12124159  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 21941401 - 21941471
Alignment:
Q  33 tctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcactt 103  Q
    ||||| |||||||||||||||  |||||| |||  | |||||||| |||| ||||||||||||||| ||||    
T  21941401 tctaacacatgtgaatgaaaattattttatgatggtatatttgaagaatggttgtccaattcctctgactt 21941471  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 35479106 - 35479038
Alignment:
Q  273 tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcataga 341  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  35479106 tgataagaaggctgaagatggagtcaagattcaagttgatagccttggacttgatgattgtagcttaga 35479038  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 376
Target Start/End: Complemental strand, 24578544 - 24578442
Alignment:
Q  277 aagaaggttgaagatggagttaagattgaa---gttgatagccttggacttgatgattgtagcatagatcattgggatgattagttgaaatgtcaatcat 373  Q
    |||||||||| ||||||||| |||||||||   | ||| | ||||||||||||||||||||||||||| | |||||   ||||||||||||||  |||||    
T  24578544 aagaaggttggagatggagtcaagattgaaaaagatgaaaaccttggacttgatgattgtagcatagacctttgggcaaattagttgaaatgtatatcat 24578445  T
Q  374 taa 376  Q
    |||    
T  24578444 taa 24578442  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 3797255 - 3797321
Alignment:
Q  275 ataagaaggttgaagatggagttaagattgaagt--tgatagccttggacttgatgattgtagcata 339  Q
    |||||||||||| | ||||||| ||||||||| |  ||| |||||||||||||||||||||||||||    
T  3797255 ataagaaggttggatatggagtcaagattgaaatgatgaaagccttggacttgatgattgtagcata 3797321  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 4216380 - 4216446
Alignment:
Q  275 ataagaaggttgaagatggagttaagattgaagt--tgatagccttggacttgatgattgtagcata 339  Q
    |||||||||||| | ||||||| ||||||||| |  ||| |||||||||||||||||||||||||||    
T  4216380 ataagaaggttggatatggagtcaagattgaaatgatgaaagccttggacttgatgattgtagcata 4216446  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 9367694 - 9367628
Alignment:
Q  273 tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcata 339  Q
    |||||||||||||| ||||||||| |||||||||| ||| | | ||  |||||||||||||||||||    
T  9367694 tgataagaaggttggagatggagtcaagattgaagatgaaaactttatacttgatgattgtagcata 9367628  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 6811572 - 6811443
Alignment:
Q  271 gatgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcatagatcattg-ggatgattagttgaaatgtcaa 369  Q
    ||||||||||| ||| |||||||||| ||  ||||||||||||| |||| | || |||||||||| ||||| | ||| ||  ||||| || ||||||  |    
T  6811572 gatgataagaatgttcaagatggagtaaaagttgaagttgatagtcttgaaattaatgattgtagtataga-ctttgaggcggattaattcaaatgtata 6811474  T
Q  370 tcattaaagaattaaacacatattatatata 400  Q
    |||||||  || |||||||||||||||||||    
T  6811473 tcattaagaaactaaacacatattatatata 6811443  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27546908 - 27546994
Alignment:
Q  16 agaaaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcact 102  Q
    ||||| ||||| |||| |||||  ||||||||||| || ||||||| |||  | |||||||| |||| |||||||||||||| ||||    
T  27546908 agaaatcgaatgatgtgtctaactcatgtgaatgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact 27546994  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 38871290 - 38871358
Alignment:
Q  271 gatgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcata 339  Q
    ||||||||||||| ||||||| |||| |||||||||| ||  ||||||  | |||||||||||| ||||    
T  38871290 gatgataagaaggctgaagatagagtaaagattgaagatggcagcctttcaattgatgattgtaacata 38871358  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 20619978 - 20620045
Alignment:
Q  273 tgataagaaggttgaagatggagttaagattgaagttgatagccttggacttgatgattgtagcataga 341  Q
    ||||||||| |||||| ||| ||| |||||||||| ||| || |||| |||||||||||||||||||||    
T  20619978 tgataagaatgttgaa-atgaagtcaagattgaagatgaaagtcttgaacttgatgattgtagcataga 20620045  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 19030839 - 19030887
Alignment:
Q  318 tggacttgatgattgtagcatagatcattgggatgattagttgaaatgt 366  Q
    |||||||||||||||||||||| ||  |||||  |||||||||||||||    
T  19030839 tggacttgatgattgtagcataaatatttgggtagattagttgaaatgt 19030887  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 45294867 - 45294775
Alignment:
Q  277 aagaaggttgaagatggagttaagattgaa---gttgatagccttggacttgatgattgtagcatagatcattgggatgattagttgaaatgt 366  Q
    ||||| |||||||||||||| |||||||||   | ||| ||||| | ||||||||||||||| ||||||| |  ||  |||||||||||||||    
T  45294867 aagaatgttgaagatggagtcaagattgaataggatgaaagcctggaacttgatgattgtagtatagatcttatggcggattagttgaaatgt 45294775  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 13750714 - 13750751
Alignment:
Q  273 tgataagaaggttgaagatggagttaagattgaagttg 310  Q
    |||||||||||||||||||||| | |||||||||||||    
T  13750714 tgataagaaggttgaagatggaatcaagattgaagttg 13750751  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 13423313 - 13423269
Alignment:
Q  322 cttgatgattgtagcatagatcattgggatgattagttgaaatgt 366  Q
    |||||||||||||||||||||| ||  || |||||||||||||||    
T  13423313 cttgatgattgtagcatagatctttcagaggattagttgaaatgt 13423269  T

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