View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2010_low_1 (Length: 727)
Name: NF2010_low_1
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 26122499 - 26122194
Alignment:
| Q |
3 |
gcaatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgagtttaggataaaactggggattataaacctcaaaatgtg |
102 |
Q |
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| T |
26122499 |
gcaatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagataaagctattgagtttaggataaatttggggattataaaccttaaaatgtg |
26122400 |
T |
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| Q |
103 |
actattacacaacgatcaccaaggatcacgtgttatttcccttttacaaattgttagtaagattgcaattgcatcatgaccaaaaagtgtgtgacgatcg |
202 |
Q |
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| T |
26122399 |
actattacacaacgatcac----------gtgttatttcccttttacagattgttggtaagattgcaattgcatcatgaccaaaaagtgtgtgacgatcg |
26122310 |
T |
|
| Q |
203 |
agcttttgatacaagtgtgctatgtgaaaattggaacaatgcaaactctgatgcttttgtagcttatatagatatagaagtgaaaattctagcatggttt |
302 |
Q |
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| T |
26122309 |
agcttttgatacaagtgtgctgtgtgaaaattggaaaaatgcaaactctgatgcttttgtagcttata------tagaagtgaaaattctagcatggttt |
26122216 |
T |
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| Q |
303 |
ctttttagtagtattggatcac |
324 |
Q |
| |
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|||||||||| || |||||||| |
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| T |
26122215 |
ctttttagtattactggatcac |
26122194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 328 - 603
Target Start/End: Complemental strand, 26122041 - 26121768
Alignment:
| Q |
328 |
tatggatatggtaaagtccgaaggttattcttaatatatataatcgatgtcgatttattagtgtcatgtcccgttattcatgtttatatcggtgtttcat |
427 |
Q |
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| T |
26122041 |
tatggatatggtaaaggccaaaggatattcttaatatatt--atcaatgtcgatttatcagtgtcatgtcccgttattcatgtttatatcggtgtttcat |
26121944 |
T |
|
| Q |
428 |
agtgaactattggatcaatggcagctaggaaagatttacgattcatcggtttacaactgttgtagcattagatttagaagcaataatgacatttgttgag |
527 |
Q |
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| T |
26121943 |
agtgaactattggatcaatggcagctagggaatatttacgattcatcagtttacaaccattgtagcgtaagatttagaagcaataatgacatttgttgag |
26121844 |
T |
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| Q |
528 |
ttgtttcccctatgcattttgtaccgatgaaatactaaaatatttttagcgatgaaccaaaacgagaatgaagtat |
603 |
Q |
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| T |
26121843 |
ttgttgctcctatgcactttgtaccgatgaaacactaaaatatttgtagcgatgaaccaatacgagaatgaagtat |
26121768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 26131793 - 26131577
Alignment:
| Q |
4 |
caatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgagtttaggataaaactggggattataaacctcaaaatgtga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||| || ||||| |
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| T |
26131793 |
caatgacttttgtcttcttttcaatgatgaatcaaacatagatgaagatgaagctattgaatttgagataaaatttgggattataaaccttaagatgtgg |
26131694 |
T |
|
| Q |
104 |
ctattacacaacgatcaccaaggatcacgtgttatttcccttttacaaattgttagtaagattgcaattgcatcatgaccaaaaagtgtgtgacgatcga |
203 |
Q |
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| T |
26131693 |
ttgttgcacaaa--------------acgtattacttcccgtttacaatttgttagtaagattgaaattgcattatgaccaaaaagtgtgtgacggtcga |
26131608 |
T |
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| Q |
204 |
gcttttgatacaagtgtgctatgtgaaaatt |
234 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
26131607 |
gcttttgatacaggtgtgctatgtgaaaatt |
26131577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 553 - 671
Target Start/End: Complemental strand, 26130093 - 26129975
Alignment:
| Q |
553 |
gatgaaatactaaaatatttttagcgatgaaccaaaacgagaatgaagtattacaaggcaaaccaaagtagaaaaggaaatttaattcatcatgacatta |
652 |
Q |
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||||||| |||||| ||||||||| |||||| ||| |||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
26130093 |
gatgaaacactaaagtatttttagtgatgaatcaatacgaaaatcaagtattacaaggcaaaccagagtaggaaaggaaatttaattcatcatgacatta |
26129994 |
T |
|
| Q |
653 |
ttttcttagcttaatatga |
671 |
Q |
| |
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||||||| ||||||||||| |
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| T |
26129993 |
ttttcttcgcttaatatga |
26129975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 26131585 - 26131543
Alignment:
| Q |
282 |
gtgaaaattctagcatggtttctttttagtagtattggatcac |
324 |
Q |
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| T |
26131585 |
gtgaaaattctagcatgatttctttttagtagtactggatcac |
26131543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 671
Target Start/End: Complemental strand, 26121757 - 26121728
Alignment:
| Q |
642 |
tcatgacattattttcttagcttaatatga |
671 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
26121757 |
tcatgacattattttcttagcttaatatga |
26121728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 41
Target Start/End: Complemental strand, 27502682 - 27502653
Alignment:
| Q |
12 |
tttgtcttcttttcaatgatgaatcaaaca |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
27502682 |
tttgtcttcttttcaatgatgaatcaaaca |
27502653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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