View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2010_low_10 (Length: 413)

Name: NF2010_low_10
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2010_low_10
NF2010_low_10
[»] chr5 (1 HSPs)
chr5 (16-395)||(40163007-40163383)
[»] chr3 (2 HSPs)
chr3 (290-395)||(53556560-53556664)
chr3 (319-388)||(43399791-43399860)
[»] chr8 (4 HSPs)
chr8 (290-395)||(38681421-38681526)
chr8 (290-395)||(38682674-38682779)
chr8 (316-393)||(16395897-16395973)
chr8 (179-286)||(42313489-42313594)
[»] chr1 (1 HSPs)
chr1 (179-286)||(41327135-41327242)
[»] chr6 (2 HSPs)
chr6 (179-286)||(20910243-20910349)
chr6 (179-286)||(20924691-20924797)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 40163383 - 40163007
Alignment:
Q  16 agagagatagagggagagacaactcaccgtggcaatagaaaatgatgttatctgagaagagaagtgagaataccctttttgcttctctgtgtcagtatta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40163383 agagagatagagggagagacaactcaccgtggcaatagaaaatgatgttatctgagaagagaagtgagaaagccctttttgcttctctgtgtcagtatta 40163284  T
Q  116 ggttccctagttgttaccgactcgttgaggtttcctcactgttaccatcgttcgtgataggtcgccatggattgttccgacgcattctccatatctgtaa 215  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40163283 ggttccctcgttgttaccgactcgttgaggtttcctcgctgttacca----tcgtgataggtcgccatggattgttccgacgcattctccatatctgtaa 40163188  T
Q  216 tatagggagagataggcttcgaaggagattcgatggacagggagaggcagcgattggtgttgaaaaggtgcgaagtgtgaggaggtgtgtggatcataa- 314  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||     
T  40163187 tatagggagagacaggctccgaaggagattcgatggacagggagaggcagcggttggtgttgaaagggtgcgaagtgtgatgaggtgtgtggatcataag 40163088  T
Q  315 gggggagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggtggtgatg 395  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40163087 gggggagaacgtcggaggattgagggagaagtttggtggtcgccgccgatagatggggggagagggttggcggtggtgatg 40163007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 53556560 - 53556664
Alignment:
Q  290 gtgtgaggaggtgtgtggatcataagggggagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggtg 389  Q
    |||||||||| |||||||| || ||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||| ||||| |||||||| |||||    
T  53556560 gtgtgaggagatgtgtggagcagaagggggagaacgtcagtggattgagggagaggcttggtggtcgccgccgatggat-gggggagagggttgccggtg 53556658  T
Q  390 gtgatg 395  Q
    ||||||    
T  53556659 gtgatg 53556664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 43399860 - 43399791
Alignment:
Q  319 gagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggt 388  Q
    ||||||||| ||||||| ||||||| | ||||||||||||||| || ||||||||| |||||||| ||||    
T  43399860 gagaacgtcagtggattaagggagaggcttggtggtcgccgccaatggatggggggagagggttgccggt 43399791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 38681526 - 38681421
Alignment:
Q  290 gtgtgaggaggtgtgtggatcataagggggagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggtg 389  Q
    |||||||||| | |||||| || | |||||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||    
T  38681526 gtgtgaggagatatgtggagcagaggggggagaacctcggtggcttgagggagaggcttggtggtcgccgccgatggatggggggagagggttgacggtg 38681427  T
Q  390 gtgatg 395  Q
    ||||||    
T  38681426 gtgatg 38681421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 38682779 - 38682674
Alignment:
Q  290 gtgtgaggaggtgtgtggatcataagggggagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggtg 389  Q
    |||||||||| | |||||| || | |||||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||    
T  38682779 gtgtgaggagatatgtggagcagaggggggagaacctcggtggcttgagggagaggcttggtggtcgccgccgatggatggggggagagggttgacggtg 38682680  T
Q  390 gtgatg 395  Q
    ||||||    
T  38682679 gtgatg 38682674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 16395973 - 16395897
Alignment:
Q  316 ggggagaacgtcggtggattgagggagaagtttggtggtcgccgccgatagatggggggcgagggttggcggtggtga 393  Q
    ||||||||||||| |||||||||| ||| |||||||||| ||||||||| ||  ||||| ||||||||||||||||||    
T  16395973 ggggagaacgtcgatggattgaggcagaggtttggtggttgccgccgat-gaatgggggagagggttggcggtggtga 16395897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 42313489 - 42313594
Alignment:
Q  179 gccatggattgttccgacgcattctccatatctgtaatatagggagagataggcttc-gaaggagattcgatggacagggagaggcagcgattggtgttg 277  Q
    ||||||||||||||||  |||||||||| || ||||| |||||||||| | || ||| |||||||||| |||||  ||| ||| || ||| |||||||||    
T  42313489 gccatggattgttccggtgcattctccaaatatgtaacatagggagag-tcgggttctgaaggagatttgatgg--aggcagaagcggcgtttggtgttg 42313585  T
Q  278 aaaaggtgc 286  Q
    ||| |||||    
T  42313586 aaagggtgc 42313594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 41327135 - 41327242
Alignment:
Q  179 gccatggattgttccgacgcattctccatatctgtaatatagggagagataggcttc-gaaggagattcgatggacagggagaggcagcgattggtgttg 277  Q
    |||||||||||||||| ||||||| ||| || ||||| |||||||||| | || ||| ||||||||||||||||| ||| ||| || ||| |||||||||    
T  41327135 gccatggattgttccggcgcattccccaaatatgtaacatagggagag-tcgggttctgaaggagattcgatggagaggtagaagcggcgtttggtgttg 41327233  T
Q  278 aaaaggtgc 286  Q
    ||| |||||    
T  41327234 aaagggtgc 41327242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 20910243 - 20910349
Alignment:
Q  179 gccatggattgttccgacgcattctccatatctgtaatatagggagagataggcttc-gaaggagattcgatggacagggagaggcagcgattggtgttg 277  Q
    |||||||||||||||| ||||||| | | |||||||| |||||||||| | || ||| ||||||||||||||||| ||| |||  | ||| |||||||||    
T  20910243 gccatggattgttccggcgcattcccaaaatctgtaacatagggagag-tcgggttctgaaggagattcgatggagaggtaga-acggcgtttggtgttg 20910340  T
Q  278 aaaaggtgc 286  Q
    ||| |||||    
T  20910341 aaagggtgc 20910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 20924691 - 20924797
Alignment:
Q  179 gccatggattgttccgacgcattctccatatctgtaatatagggagagataggcttc-gaaggagattcgatggacagggagaggcagcgattggtgttg 277  Q
    |||||||||||||||| ||||||| | | |||||||| |||||||||| | || ||| ||||||||||||||||| ||| |||  | ||| |||||||||    
T  20924691 gccatggattgttccggcgcattcccaaaatctgtaacatagggagag-tcgggttctgaaggagattcgatggagaggtaga-acggcgtttggtgttg 20924788  T
Q  278 aaaaggtgc 286  Q
    ||| |||||    
T  20924789 aaagggtgc 20924797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University