View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2010_low_12 (Length: 372)

Name: NF2010_low_12
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2010_low_12
NF2010_low_12
[»] chr2 (7 HSPs)
chr2 (11-154)||(28312406-28312549)
chr2 (158-358)||(28313663-28313849)
chr2 (44-155)||(21198317-21198428)
chr2 (12-127)||(23939062-23939177)
chr2 (45-154)||(26263762-26263871)
chr2 (44-152)||(19990617-19990725)
chr2 (39-104)||(10925173-10925237)
[»] chr3 (1 HSPs)
chr3 (32-154)||(13426054-13426176)
[»] chr6 (1 HSPs)
chr6 (44-152)||(24132317-24132425)
[»] chr1 (4 HSPs)
chr1 (71-147)||(10548697-10548773)
chr1 (71-152)||(16766942-16767023)
chr1 (44-155)||(33802708-33802819)
chr1 (71-124)||(25370807-25370860)
[»] chr7 (3 HSPs)
chr7 (32-126)||(10349863-10349956)
chr7 (44-155)||(15891373-15891484)
chr7 (32-100)||(8106934-8107002)
[»] scaffold0102 (1 HSPs)
scaffold0102 (14-104)||(20817-20907)
[»] chr4 (1 HSPs)
chr4 (12-125)||(21883827-21883940)
[»] chr8 (5 HSPs)
chr8 (71-155)||(14822712-14822796)
chr8 (44-128)||(23709659-23709743)
chr8 (162-263)||(40456705-40456806)
chr8 (44-152)||(755039-755147)
chr8 (12-128)||(30758028-30758143)
[»] chr5 (2 HSPs)
chr5 (39-128)||(31049566-31049655)
chr5 (20-128)||(3780794-3780902)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 28312406 - 28312549
Alignment:
Q  11 cagagaaagtcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccataga 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28312406 cagagaaagtcaactcagtaaaagtgacaccaacaaactcaagcaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccataga 28312505  T
Q  111 gaacgtgctaaacaacttagtaccatttggatgcgcccaaaaaa 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28312506 gaacgtgctaaacaacttagtaccatttggatgcgcccaaaaaa 28312549  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 158 - 358
Target Start/End: Original strand, 28313663 - 28313849
Alignment:
Q  158 tagacaaggatgagtcttaaccatgcttgccttcaaattttacaatgttcgagttgtataagcctaacagctttcagattctaaattctaaataaagggt 257  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||| ||||  |||||||| |||||||||||||||||||||||    
T  28313663 tagacaaggatgagtcttaaccatgcttgccttcaatttttacgatgtttgggttgtataatcctactagctttcaaattctaaattctaaataaagggt 28313762  T
Q  258 aattttaaaggnnnnnnntaaggcatgcaagaatacaataaagtggaaaaaagtaataatctaacaaaatttagagagtcctactaaatacatgtttgat 357  Q
    |||||||||||       ||||||              |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28313763 aattttaaaggaaaaaaataaggc-------------ttaaagt-gaaaaaagtaataatctaacaaaatttagagagtcctactaaatacatgtttgat 28313848  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 21198317 - 21198428
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    ||||||||| |||| ||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| || ||||||| ||    
T  21198317 caaactcaagcaacggaagatggtatttgttggtcttataagtggattctaacacaagcaccgtagagaacatgctaaacaacttaatatcatttgggtg 21198416  T
Q  144 cgcccaaaaaac 155  Q
     |||||||||||    
T  21198417 tgcccaaaaaac 21198428  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 23939062 - 23939177
Alignment:
Q  12 agagaaagtcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagag 111  Q
    |||||| ||||||| ||||||||||| |||| | ||||||| | ||| ||||| |||| |||||||||||||| ||||||| |||||||||||   ||||    
T  23939062 agagaacgtcaacttagtaaaagtgataccaactaactcaagctacataagataatatttgttggtcttataaatggaatccaacacaagcacagaagag 23939161  T
Q  112 aacgtgctaaacaact 127  Q
    |||||| |||||||||    
T  23939162 aacgtgttaaacaact 23939177  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 26263871 - 26263762
Alignment:
Q  45 aaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatgc 144  Q
    |||||||| ||||||||||  |||  ||||| |||||||||||||||| ||||||| || | | ||||||||| ||||||||||  ||||||||||||||    
T  26263871 aaactcaagcaacagaagacaatacttgttgctcttataagtggaatccaacacaatcatcgttgagaacgtgttaaacaacttgataccatttggatgc 26263772  T
Q  145 gcccaaaaaa 154  Q
     |||| ||||    
T  26263771 acccataaaa 26263762  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 19990617 - 19990725
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    |||||||||  ||||||||| | ||  ||||||||||||| |||||||| |||||||||||| || |||||||| ||||||||||  |||||| |||| |    
T  19990617 caaactcaagaaacagaagacggtacttgttggtcttatatgtggaatccaacacaagcaccgtaaagaacgtgttaaacaacttgataccatctggacg 19990716  T
Q  144 cgcccaaaa 152  Q
    | |||||||    
T  19990717 cacccaaaa 19990725  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 10925237 - 10925173
Alignment:
Q  39 accagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcac 104  Q
    |||| ||||||||| |||||||||| ||||  ||||||| |||||| ||||||| |||||||||||    
T  10925237 accaacaaactcaagcaacagaagacgatacttgttggt-ttataaatggaatccaacacaagcac 10925173  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 13426054 - 13426176
Alignment:
Q  32 aagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagt 131  Q
    ||||| ||||| ||||||||| |||||||| |   ||| |||||||| ||||| ||||||| |||||||||||| |||||||| || |||| |||||| |    
T  13426054 aagtggcaccaacaaactcaatcaacagaaaacagtatttgttggtcatataaatggaatccaacacaagcaccgtagagaacatgttaaaaaacttaat 13426153  T
Q  132 accatttggatgcgcccaaaaaa 154  Q
    |||||||||||||||||| ||||    
T  13426154 accatttggatgcgcccagaaaa 13426176  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 24132317 - 24132425
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    ||||||||| |||| |||||  |||  ||||||||||||| ||||||||||||||||||||| |||||||| || ||||||||||  |||||| ||||||    
T  24132317 caaactcaagcaacggaagacaatacttgttggtcttatatgtggaatctaacacaagcaccgtagagaacatgttaaacaacttgataccatctggatg 24132416  T
Q  144 cgcccaaaa 152  Q
    | |||||||    
T  24132417 cacccaaaa 24132425  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 10548773 - 10548697
Alignment:
Q  71 tgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatgcgcc 147  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||   ||||| ||||||||||    
T  10548773 tgttggtcttataagtggaatccaacacaagcaccataaagaacgtgttaaacaacttgaaaccatctggatgcgcc 10548697  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 16766942 - 16767023
Alignment:
Q  71 tgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatgcgcccaaaa 152  Q
    ||||||| ||||| |||||||| ||||||||| || ||||||| ||| ||||||||||  |||| || || |||||||||||    
T  16766942 tgttggtattatatgtggaatccaacacaagccccgtagagaatgtgttaaacaacttgataccgttcgggtgcgcccaaaa 16767023  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 33802819 - 33802708
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    ||||||||| |||  ||||| ||||  |||| ||||| || || ||||| |||||||||||| | ||||||||| ||||||||||  ||  || ||||||    
T  33802819 caaactcaagcaatggaagacgatacttgtttgtcttgtatgttgaatccaacacaagcaccgtggagaacgtgttaaacaacttgatagaatctggatg 33802720  T
Q  144 cgcccaaaaaac 155  Q
     |||||||||||    
T  33802719 tgcccaaaaaac 33802708  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 25370807 - 25370860
Alignment:
Q  71 tgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaaca 124  Q
    ||||||| |||||||||||||||||||||||||   |||| |||||| ||||||    
T  25370807 tgttggttttataagtggaatctaacacaagcatagtagaaaacgtgttaaaca 25370860  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 10349956 - 10349863
Alignment:
Q  32 aagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaac 126  Q
    ||||||||||| ||||||||| ||||| |||| ||||| |||||  |||||||||||||||  |||||||||| |||||||||||| ||||||||    
T  10349956 aagtgacaccaacaaactcaagcaacaaaagacgatatttgttgaacttataagtggaatccgacacaagcacaatagagaacgtg-taaacaac 10349863  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 15891484 - 15891373
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    ||||||||| |||  ||||||||||  ||||||||||||| |||||||| |||||||||||  | ||||||||| |||| |||||  ||  |||||||||    
T  15891484 caaactcaagcaatggaagatgatacttgttggtcttataggtggaatccaacacaagcacggtggagaacgtgttaaaaaacttgatagaatttggatg 15891385  T
Q  144 cgcccaaaaaac 155  Q
     |||||||||||    
T  15891384 tgcccaaaaaac 15891373  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 8107002 - 8106934
Alignment:
Q  32 aagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaa 100  Q
    ||||| ||||| ||||||||| ||||| |||||| ||  ||||| |||||||||||||||| |||||||    
T  8107002 aagtggcaccaacaaactcaagcaacaaaagatggtacttgttgatcttataagtggaatccaacacaa 8106934  T

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Target: scaffold0102 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 20907 - 20817
Alignment:
Q  14 agaaagtcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcac 104  Q
    |||| |||||||  ||| ||||||||||| ||||||||| | ||  ||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  20907 agaacgtcaactttgtagaagtgacaccaacaaactcaagcgacgaaagataatatttgttgttcttataagtggattctaacacaagcac 20817  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 21883827 - 21883940
Alignment:
Q  12 agagaaagtcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagag 111  Q
    |||||| |||||||| ||| |||| |||||| ||||||||| ||||  ||||  |||| ||| |||||| | ||||||||| |||||||||||  ||||     
T  21883827 agagaacgtcaactcggtataagttacaccaacaaactcaagcaacgaaagacaatatttgtcggtcttcttagtggaatccaacacaagcacggtagaa 21883926  T
Q  112 aacgtgctaaacaa 125  Q
    |||||| |||||||    
T  21883927 aacgtgttaaacaa 21883940  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 14822796 - 14822712
Alignment:
Q  71 tgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatgcgcccaaaaaac 155  Q
    |||| |||||||| |||||||| |||||||||||| | |||||| || ||||||||||  ||  ||||||||| |||||||||||    
T  14822796 tgtttgtcttataggtggaatccaacacaagcaccgtggagaacatgttaaacaacttgatagaatttggatgtgcccaaaaaac 14822712  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 23709659 - 23709743
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaactt 128  Q
    ||||||||| |||  ||||| ||||  | ||||||||||| |||||||| |||||||||||  | ||||||||| ||||||||||    
T  23709659 caaactcaagcaatggaagacgatacttattggtcttatacgtggaatccaacacaagcacggtggagaacgtgttaaacaactt 23709743  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 40456705 - 40456806
Alignment:
Q  162 caaggatgagtcttaaccatgcttgccttcaaattttacaatgttcgagttgtataagcctaacagctttcagattctaaattctaaataaagggtaatt 261  Q
    ||||||||||||| ||||||| | ||||||   ||||||  ||||||  |||||||  ||||||| | |||| |||||||| ||  ||||||||||||||    
T  40456705 caaggatgagtctcaaccatgttggccttcggtttttacgttgttcggattgtatagtcctaacaacattcaaattctaaaatcagaataaagggtaatt 40456804  T
Q  262 tt 263  Q
    ||    
T  40456805 tt 40456806  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 755147 - 755039
Alignment:
Q  44 caaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaacttagtaccatttggatg 143  Q
    ||||||||| |||  ||||| ||||  |||| ||||| || |||||||| |||||||||||  | |||||| || ||||||||||  ||  |||||||||    
T  755147 caaactcaagcaatggaagacgatacttgtttgtcttgtatgtggaatccaacacaagcactgtggagaacatgttaaacaacttgatagaatttggatg 755048  T
Q  144 cgcccaaaa 152  Q
     ||||||||    
T  755047 tgcccaaaa 755039  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 30758028 - 30758143
Alignment:
Q  12 agagaaagtcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagag 111  Q
    |||||| || ||||| ||| |||| |||||| ||||| ||| || || ||||  |||| |||||||||||||||| ||||||||| ||| | |   ||||    
T  30758028 agagaacgttaactcggtagaagtaacaccaacaaacccaagca-caaaagacaatatatgttggtcttataagtcgaatctaacgcaaacgcatgagag 30758126  T
Q  112 aacgtgctaaacaactt 128  Q
    |||||| ||||||||||    
T  30758127 aacgtgttaaacaactt 30758143  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 31049566 - 31049655
Alignment:
Q  39 accagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgctaaacaactt 128  Q
    |||| |||||||||  ||| ||||| ||||  |||||||||||||| ||||| | | |||||||||| |||  |||||| ||||||||||    
T  31049566 accaacaaactcaagtaacggaagacgatacttgttggtcttataaatggaacccatcacaagcaccgtaggcaacgtgttaaacaactt 31049655  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 3780794 - 3780902
Alignment:
Q  20 tcaactcagtaaaagtgacaccagcaaactcaaacaacagaagatgatatgtgttggtcttataagtggaatctaacacaagcaccatagagaacgtgct 119  Q
    ||||||| ||| |||| || ||| |||||||||  |||  |||| | ||| ||||||||||||||||  |||| |||||||||||   |||||| ||| |    
T  3780794 tcaactcggtagaagttacgccaacaaactcaagaaacgaaagacggtatttgttggtcttataagtcaaatccaacacaagcacatgagagaatgtgtt 3780893  T
Q  120 aaacaactt 128  Q
    |||||||||    
T  3780894 aaacaactt 3780902  T

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