View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2010_low_13 (Length: 351)
Name: NF2010_low_13
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_low_13 |
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| [»] scaffold1084 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold1084 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold1084
Description:
Target: scaffold1084; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 2031 - 2381
Alignment:
| Q |
1 |
gaatgtattgggttggaattggcacaacaggtaaaatatgaaaaggttgaagagctgtccactgcaagattgtgcattgaggaactagaatctcaggcag |
100 |
Q |
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| T |
2031 |
gaatgtattgggttggaattggcacaacaggtaaaatatgaaaaggttgaagagctgtccactgcaagattgtgcattgaggaactagaatctcaggcag |
2130 |
T |
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| Q |
101 |
catgtcgacagaaagaggtagacgtttctccttaactgcttgttctatggtggttggcttacaggtgaactgtaattctttcttttaatttacttttgta |
200 |
Q |
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| T |
2131 |
catgtcgacagaaagaggtagacgtttctccttaactgcttattctatggtggttggcttacaggtgaaccgtaattctttcttttaatttacttttgta |
2230 |
T |
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| Q |
201 |
tttgtacttgcatttgatcaatttttgtaaatcgattcatatgtttttgtgatgcagccttgggaaagcaagttcattgattcatgacgcgtttgggctg |
300 |
Q |
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| T |
2231 |
tttgtacttgcatttgatcaatttttgtaaatagattcatatgtttttgtgatgcagccttgggaaagcgagttcattgattcatgacgcgtttgggctg |
2330 |
T |
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| Q |
301 |
aatatgcattgaaaaggtaggaagcacaggcacaaaataggtgcttgaccc |
351 |
Q |
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| T |
2331 |
aatatgcattgaaaaggcaggaagcacaggcacaaaataggtgcttgaccc |
2381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 34082703 - 34082585
Alignment:
| Q |
2 |
aatgtattgggttggaattggcacaacaggtaaaatatgaaaaggttgaagagctgtccactgcaagattgtgcattgaggaactagaatctcaggcagc |
101 |
Q |
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| T |
34082703 |
aatgtattgggttggggttggcacaacaggtaaaatatgaaaaggttgaagagctgtctgctgcaagactgcgcattgaagaactagaatctcaggcagc |
34082604 |
T |
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| Q |
102 |
atgtcgacagaaagaggta |
120 |
Q |
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| T |
34082603 |
atgtcgacagaaagaggta |
34082585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 39876640 - 39876539
Alignment:
| Q |
250 |
tgatgcagccttgggaaagcaagttcattgattcatgacgcgtttgggctgaatatgcattgaaaaggtaggaagcacaggcacaaaataggtgcttgac |
349 |
Q |
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| T |
39876640 |
tgatgcagccttgggaaagtgagtttgttgattcacagcgtgtctgggctgaatatgcattgaaaaggcaggaagcacaagcacaaaatagacgcttgac |
39876541 |
T |
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| Q |
350 |
cc |
351 |
Q |
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|| |
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| T |
39876540 |
cc |
39876539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 351
Target Start/End: Complemental strand, 44779874 - 44779773
Alignment:
| Q |
250 |
tgatgcagccttgggaaagcaagttcattgattcatgacgcgtttgggctgaatatgcattgaaaaggtaggaagcacaggcacaaaataggtgcttgac |
349 |
Q |
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|||||||||||||||| || |||| |||||||| || || |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |
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| T |
44779874 |
tgatgcagccttgggagagtgagtttgttgattcacagcgtgtctgggctgaatatgcattgaaaaggcaggaagcacaagcacaaaatagacgcttgac |
44779775 |
T |
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| Q |
350 |
cc |
351 |
Q |
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|| |
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| T |
44779774 |
cc |
44779773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 351
Target Start/End: Original strand, 2899073 - 2899169
Alignment:
| Q |
255 |
cagccttgggaaagcaagttcattgattcatgacgcgtttgggctgaatatgcattgaaaaggtaggaagcacaggcacaaaataggtgcttgaccc |
351 |
Q |
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||||| |||||||| |||||| ||||||| ||| || ||||||||||||||| |||||||| ||| |||||| ||||| |||||| ||||||||| |
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| T |
2899073 |
cagccctgggaaagggagttcaatgattcacaacgtgtctgggctgaatatgcagtgaaaaggcaggtagcacaagcacagaataggcgcttgaccc |
2899169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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