View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2010_low_14 (Length: 307)
Name: NF2010_low_14
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 42232564 - 42232290
Alignment:
| Q |
20 |
cccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctcacattcctcggctccttcacaccatcgaaatccccaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42232564 |
cccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgtcatcctcacattcctcggctccttcacaccatcgaaatccccaac |
42232465 |
T |
|
| Q |
120 |
actcaattcaaaagtccccattttattcatcttattcctcatattccttgtcaccctcacattcttcttcacttcctccaccttctctttgacaccctcc |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42232464 |
actcaattcagaagtccccattttattcatcttattcctcaaattccttgtcaccctcacattcttcttcacttcctccaccttctctttgacaccctcc |
42232365 |
T |
|
| Q |
220 |
aaatccccattactcgaatcacaaacctcaaccgtattcttcttgttcttcgaattccttgtcaccctcgcattc |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42232364 |
aaatccccattactcgaatcacaaacctcaactgtattcttcttgttcttcgaattccttgtcaccctcacattc |
42232290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 42232311 - 42232273
Alignment:
| Q |
162 |
attccttgtcaccctcacattcttcttcacttcctccac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
42232311 |
attccttgtcaccctcacattcttcttcacttcttccac |
42232273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 42232254 - 42232197
Alignment:
| Q |
237 |
atcacaaacctcaaccgtattcttcttgttcttcgaattccttgtcaccctcgcattc |
294 |
Q |
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|||||||| |||||| | ||||||||| |||||||||||||| | ||||||| ||||| |
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|
| T |
42232254 |
atcacaaatctcaactgcattcttcttattcttcgaattcctcgacaccctcacattc |
42232197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 28946090 - 28946373
Alignment:
| Q |
23 |
ccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctcacattcctcggctcct------------tcacaccatcgaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| || |
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| T |
28946090 |
ccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctctttcacaccatccaa |
28946189 |
T |
|
| Q |
111 |
atccccaacactcaattcaaaagtccccattttattcatcttattcctcatattccttgtcaccctcacattcttcttcacttcctccaccttctctttg |
210 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| || |
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| T |
28946190 |
atccccaacactcaattcagaaacccccattttatttatcttattcctcaaattccttgtcaccctcacatttttctttacttcctccaccttctccttc |
28946289 |
T |
|
| Q |
211 |
acaccctccaaatccccattactcgaatcacaaacctcaaccgtattcttcttgttcttcgaattccttgtcaccctcgcattc |
294 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| | | || ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
28946290 |
acaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattcttcgaattccttgtcaccctcacattc |
28946373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 28946334 - 28946468
Alignment:
| Q |
144 |
attcatcttattcctcatattccttgtcaccctcacattcttcttcacttcctccaccttctctttgacaccctccaaatccccattactcgaatcacaa |
243 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||||||||| || || ||||| || ||| | ||||||| |||||||| ||||||||| |
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| T |
28946334 |
attcttcttattcttcgaattccttgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaa |
28946433 |
T |
|
| Q |
244 |
acctcaaccgtattcttcttgttcttcgaattcct |
278 |
Q |
| |
|
| |||||| | ||||||||| |||||||||||||| |
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| T |
28946434 |
atctcaacagcattcttcttattcttcgaattcct |
28946468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 23 - 294
Target Start/End: Original strand, 34823453 - 34823736
Alignment:
| Q |
23 |
ccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgttatcctcacattcctcggctcct------------tcacaccatcgaa |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||| || |
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| T |
34823453 |
ccaagctcaaatcttccccaattacaacccctttattcttcacattccttgtcatcctcacactcctcggctcctccaccttctctttcacaccatccaa |
34823552 |
T |
|
| Q |
111 |
atccccaacactcaattcaaaagtccccattttattcatcttattcctcatattccttgtcaccctcacattcttcttcacttcctccaccttctctttg |
210 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| || |
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| T |
34823553 |
atccccaatactcaattcagaaacccccattttatttatcttattcctcaaattccttgtcaccctcacatttttctttacttcctccaccttctccttt |
34823652 |
T |
|
| Q |
211 |
acaccctccaaatccccattactcgaatcacaaacctcaaccgtattcttcttgttcttcgaattccttgtcaccctcgcattc |
294 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| | | || ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
34823653 |
acaccctccaaatctccattacttgaatcacaaattttagccacattcttcttattcttcgaattccttgtcaccctcacattc |
34823736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 278
Target Start/End: Original strand, 34823697 - 34823831
Alignment:
| Q |
144 |
attcatcttattcctcatattccttgtcaccctcacattcttcttcacttcctccaccttctctttgacaccctccaaatccccattactcgaatcacaa |
243 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||||||||||| || || ||||| || ||| | ||||||| |||||||| ||||||||| |
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|
| T |
34823697 |
attcttcttattcttcgaattccttgtcaccctcacattcttcttcacttcttctactttctccttcacatcatccaaattaccattactggaatcacaa |
34823796 |
T |
|
| Q |
244 |
acctcaaccgtattcttcttgttcttcgaattcct |
278 |
Q |
| |
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| |||||| | ||||||||| |||||||||||||| |
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|
| T |
34823797 |
atctcaacagcattcttcttattcttcgaattcct |
34823831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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