View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2010_low_4 (Length: 530)
Name: NF2010_low_4
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 46768457 - 46768962
Alignment:
| Q |
19 |
ctcatagtcgacaagtgcaaagctctaatgagagctaaatcacgtgctcgacgacgac---gcgacacaagcctccctgatgaccttat--cattgagat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
46768457 |
ctcatagtcgacaagtgcaaagctctaatgagagctaaatcacgtgctcgacgacgacaacgcgacacaagcctccctgatgaccttatatcattgagat |
46768556 |
T |
|
| Q |
114 |
tctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
46768557 |
tctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtt-gcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatctt |
46768655 |
T |
|
| Q |
214 |
acttgttccacacgaaacccttacttgacactaaactaacctaacaatgtcttcgttagtgatcttcccttccccgtgcagtttatataccttcctcatt |
313 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46768656 |
acgtgttccgcacgaaacccttacttgacactaaactaacctaacaatgtcttcgttagtgatcttcccttccccgtgcagtttatataccttcctcatt |
46768755 |
T |
|
| Q |
314 |
accctcattatcaatttaaagagagggattgtcaaaatgctattggttcttcttgcaatggattgttttgtgtgctttgtcatcatacacccatcagagg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46768756 |
accctcattatcaatttaaagagagggattgtcaaaatgctattggttcttcttgcaatggattgttttgtgtgctttgtcatcatacacccatcagagg |
46768855 |
T |
|
| Q |
414 |
ggtctggttccgtttatggaatcctgccatgggtacaatgtcaaataagttgggtcatttttcttatcttatgaggggcctctatacctattacaagttt |
513 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46768856 |
ggtctggttccgtttatggaatcctgccatgggtacaatgtcaaataagttgggtcatttttcttatcttatgaggggcctctatacctattacaagttt |
46768955 |
T |
|
| Q |
514 |
gcctttg |
520 |
Q |
| |
|
||||||| |
|
|
| T |
46768956 |
gcctttg |
46768962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 36259381 - 36259492
Alignment:
| Q |
87 |
cctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttcc |
186 |
Q |
| |
|
|||||| ||||| ||| ||| ||| ||||||| || ||||||||||| | ||||||| |||||||||||| |||| |||||||||||||| ||||| |
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|
| T |
36259381 |
cctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatctataatttct |
36259480 |
T |
|
| Q |
187 |
gatcctatattt |
198 |
Q |
| |
|
||||||| |||| |
|
|
| T |
36259481 |
gatcctaaattt |
36259492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 36254502 - 36254608
Alignment:
| Q |
87 |
cctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttcc |
186 |
Q |
| |
|
|||||| ||||| ||| |||| || ||||||| || ||||||||||||| ||||||| |||||| || | |||| |||||||||||| | |||||| |
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|
| T |
36254502 |
cctccccgatgaacttttcatggaagttctttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaatttcc |
36254601 |
T |
|
| Q |
187 |
gatccta |
193 |
Q |
| |
|
||||||| |
|
|
| T |
36254602 |
gatccta |
36254608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 84 - 246
Target Start/End: Original strand, 2576008 - 2576169
Alignment:
| Q |
84 |
aagcctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatt |
183 |
Q |
| |
|
||||||| || |||||||||||| || | ||||||||| | |||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
2576008 |
aagcctctcttatgaccttatcaccga-agtctttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttggaaatctattatt |
2576106 |
T |
|
| Q |
184 |
tccgatcctatatttatcaaacttcattttacttgttccacacgaaacccttacttgacacta |
246 |
Q |
| |
|
|| ||||||| ||| || |||||||| ||| | || ||||||||||||||||||||||| |
|
|
| T |
2576107 |
tctgatcctaaattcattaaacttcaccttaagcgatcggcacgaaacccttacttgacacta |
2576169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 2580433 - 2580514
Alignment:
| Q |
128 |
atgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcctatatttatcaaacttca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| |||||| ||||| ||||||| ||||||||||||||| |
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|
| T |
2580433 |
atgtgaaatctcttatgcgaatgagatgcgtatgcaaatcttggagatctatcatttctgatcctaaatttatcaaacttca |
2580514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 113 - 209
Target Start/End: Original strand, 2585804 - 2585900
Alignment:
| Q |
113 |
ttctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcctatatttatcaaacttca |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||| || ||| ||||||||||| |
|
|
| T |
2585804 |
ttctttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaacttca |
2585900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 2595169 - 2595300
Alignment:
| Q |
115 |
ctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatttta |
214 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||| |||| | ||| ||||||||||| ||| |
|
|
| T |
2595169 |
ctttccttttctgatgtgaaatcacttatgcaaatgagatgcgtatgcaaatcttggaaatctattatttctgatcatgaattcatcaaacttcacctta |
2595268 |
T |
|
| Q |
215 |
cttgttccacacgaaacccttacttgacacta |
246 |
Q |
| |
|
| || | ||||||||||||||||||||| |
|
|
| T |
2595269 |
agcgatcggcgcgaaacccttacttgacacta |
2595300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 2586131 - 2586183
Alignment:
| Q |
414 |
ggtctggttccgtttatggaatcctgccatgggtacaatgtcaaataagttgg |
466 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||||||| ||| ||||||| |
|
|
| T |
2586131 |
ggtctggttccgtttatggaaccctgtcatacgtacaatgttaaaaaagttgg |
2586183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 29151107 - 29151238
Alignment:
| Q |
116 |
tttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcattttac |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| ||||| ||||||| ||| |||||||||| ||| |
|
|
| T |
29151107 |
tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa |
29151206 |
T |
|
| Q |
216 |
ttgttccacacgaaacccttacttgacactaa |
247 |
Q |
| |
|
||||| | |||||||||||||||||||||| |
|
|
| T |
29151207 |
gcgttccgcgcgaaacccttacttgacactaa |
29151238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 26387133 - 26387198
Alignment:
| Q |
127 |
gatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttccgatcct |
192 |
Q |
| |
|
||||||||||||||||||| |||||| | || |||| |||||||||||||| ||||| |||||| |
|
|
| T |
26387133 |
gatgtgaaatctcttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct |
26387198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 209
Target Start/End: Original strand, 35766162 - 35766284
Alignment:
| Q |
87 |
cctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttcc |
186 |
Q |
| |
|
||||||| |||| ||||||| ||| |||||||||| |||||||||||||||||||| | ||||| ||| | |||| |||||||| ||||| || ||| |
|
|
| T |
35766162 |
cctccctaatgatcttatcactgaagttctttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctcc |
35766261 |
T |
|
| Q |
187 |
gatcctatatttatcaaacttca |
209 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
35766262 |
gatcctaaatttgccaaacttca |
35766284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 19353574 - 19353680
Alignment:
| Q |
87 |
cctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttcc |
186 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||| || |||||||| |||| ||||||| |||||| ||||| |||| |||||||||||||| ||||| |
|
|
| T |
19353574 |
cctccctgatgaacttgtcactgaagttctttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctatattttcc |
19353673 |
T |
|
| Q |
187 |
gatccta |
193 |
Q |
| |
|
|||||| |
|
|
| T |
19353674 |
aatccta |
19353680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 19355193 - 19355297
Alignment:
| Q |
87 |
cctccctgatgaccttatcattgagattctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttcc |
186 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||| || | |||||| |||| ||||||| |||||| ||||| |||| |||||||||||||| |||||| |
|
|
| T |
19355193 |
cctccctgatgaacttgtcactgaagttctttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttcc |
19355292 |
T |
|
| Q |
187 |
gatcc |
191 |
Q |
| |
|
|||| |
|
|
| T |
19355293 |
aatcc |
19355297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 30398259 - 30398329
Alignment:
| Q |
115 |
ctttccttctccgatgtgaaatctcttatgcgaatgagatgtgtccgcaaatcttggaaatctattatttc |
185 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||| |||| || || |||||||||||||||||||||| |
|
|
| T |
30398259 |
ctttccttttccaatgtgaaatctcttatgctaatgcgatgagtatgccaatcttggaaatctattatttc |
30398329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 21621253 - 21621213
Alignment:
| Q |
115 |
ctttccttctccgatgtgaaatctcttatgcgaatgagatg |
155 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
21621253 |
ctttccttttccaatgtgaaatctcttatgcgaatgcgatg |
21621213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 21642923 - 21642883
Alignment:
| Q |
115 |
ctttccttctccgatgtgaaatctcttatgcgaatgagatg |
155 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
21642923 |
ctttccttttccaatgtgaaatctcttatgcgaatgcgatg |
21642883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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