View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2010_low_6 (Length: 508)
Name: NF2010_low_6
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2010_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 51963154 - 51962783
Alignment:
| Q |
9 |
gattatactatcaatttcaaacttttgaatataatattaacccatgccgctaatcaagtggttgaactcaagttattgatgagtttcggttaacacaatt |
108 |
Q |
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| T |
51963154 |
gattatactatcaatttcaaacttttgaatataatattaacccatgccgctaatcaagtggttgaactcaagttattgatgagtttcggttaacacaatt |
51963055 |
T |
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| Q |
109 |
tgtttcggaaaatccaaatttattttttgatcgaactctgaattatggaaacctctttaattgagaacatgaaggttaa-ggggnnnnnnngagagtata |
207 |
Q |
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| T |
51963054 |
tgtttcggaaaatccaaatttattttttgaccaaactctgaattatggaaacctctttaattgagaacatgaaggttaagggggaaaaaaagagagtata |
51962955 |
T |
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| Q |
208 |
tttagctgacctatatgcaattaaaaaactatctacatgca--agcagcctccgaagtcagagctaatgtatacaacaagttttatttttgtaattaata |
305 |
Q |
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| T |
51962954 |
tttagctgacctatatgcaattaaaaaactatctacatgcattagcagcctccgaagtcagagctaatgtacacaacaagttttatttttgtaattaata |
51962855 |
T |
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| Q |
306 |
ataaagaatctaggatgcatgtattgtattattattttatgcataaggccggtgtgtcaaatacaaatattt |
377 |
Q |
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| T |
51962854 |
ataaagaatctaggatgcatgtattgtattattattttatgcataaggccggtgtgtcaaatacaaatattt |
51962783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 402 - 508
Target Start/End: Complemental strand, 51962768 - 51962656
Alignment:
| Q |
402 |
gtcatctctcatagaaaagtgtgt--atatatagatagatagacattgccagttcaaaatca----gtcattaaaagcaagcaaatcatcacagagacac |
495 |
Q |
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| T |
51962768 |
gtcatctctcatagaaaagtgtgtgtatatatagatagatagacattgccagttcaaaatcatattgtcattaaaagcaagcaaatcatcacagagacac |
51962669 |
T |
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| Q |
496 |
agatctagagtgt |
508 |
Q |
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| T |
51962668 |
agatctagagtgt |
51962656 |
T |
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