View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2010_low_8 (Length: 484)

Name: NF2010_low_8
Description: NF2010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2010_low_8
NF2010_low_8
[»] chr6 (24 HSPs)
chr6 (5-201)||(5065365-5065563)
chr6 (343-466)||(5065054-5065178)
chr6 (6-208)||(5253715-5253919)
chr6 (334-462)||(5346607-5346732)
chr6 (169-327)||(5126268-5126427)
chr6 (169-298)||(5065195-5065322)
chr6 (15-216)||(5177930-5178127)
chr6 (43-127)||(23127300-23127384)
chr6 (15-118)||(5279755-5279860)
chr6 (5-118)||(5346210-5346325)
chr6 (149-227)||(5178132-5178210)
chr6 (5-118)||(5126628-5126743)
chr6 (15-118)||(5688902-5689007)
chr6 (174-227)||(5688716-5688769)
chr6 (174-226)||(5279988-5280040)
chr6 (62-117)||(5398286-5398341)
chr6 (43-141)||(5098432-5098530)
chr6 (21-107)||(5100828-5100916)
chr6 (46-127)||(5124433-5124514)
chr6 (21-107)||(5135929-5136017)
chr6 (17-118)||(5242511-5242614)
chr6 (211-259)||(5253988-5254036)
chr6 (176-216)||(5279915-5279955)
chr6 (5-118)||(5427081-5427196)
[»] chr3 (4 HSPs)
chr3 (5-117)||(47985393-47985507)
chr3 (5-117)||(47994680-47994794)
chr3 (5-117)||(48003967-48004081)
chr3 (5-117)||(48013252-48013366)
[»] chr4 (2 HSPs)
chr4 (59-159)||(4132576-4132676)
chr4 (44-118)||(4122643-4122717)
[»] scaffold0294 (1 HSPs)
scaffold0294 (39-116)||(7878-7955)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 5065563 - 5065365
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| |||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  103 tatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgcttt 201  Q
    ||||| |||||||||| ||  ||||||||||| | |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||||||    
T  5065463 tatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt 5065365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 343 - 466
Target Start/End: Complemental strand, 5065178 - 5065054
Alignment:
Q  343 caatctgccttcgttcatttt-cttctgttaggctttagaaatttcatatatattcattggttctatcattgtaaaatcatcaatatatgaaaaagtttt 441  Q
    |||||||| || ||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  5065178 caatctgcttttgttcatttttcttctgttaggctttagaaatttcatatgtattcgttggttctatcattgtaaaatcatcaatatatgaagaagtttt 5065079  T
Q  442 aaacattcattaccagtgtacataa 466  Q
    ||||||||||||| |||||||||||    
T  5065078 aaacattcattacgagtgtacataa 5065054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 5253715 - 5253919
Alignment:
Q  6 gaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagttt 103  Q
    ||||||| ||| |||||| | | |||||||||||  ||||| |||||||| ||||||||||||||||||||  ||||| ||||||||||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  104 atcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgt 203  Q
    |||| |||||||| |  |  ||||||||||| | |||||||||||||| |||||||| || || ||||||||||||| || ||||||||||||| |||||    
T  5253815 atctcatatatgacgagcccattgctgaaaaggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgt 5253914  T
Q  204 cagaa 208  Q
     ||||    
T  5253915 tagaa 5253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 334 - 462
Target Start/End: Original strand, 5346607 - 5346732
Alignment:
Q  334 tgcattctgcaatctgccttcgttcatttt-cttctgttaggctttagaaatttcatatatattcattggttctatcattgtaaaatcatcaatatatga 432  Q
    |||| ||||||||||||||| ||||||||| ||||| ||||||| |||||||| ||||| |||| ||||||| |||||||||||||||||| |||    |    
T  5346607 tgcagtctgcaatctgcctttgttcatttttcttcttttaggctgtagaaattccatatgtatttattggttatatcattgtaaaatcatcgata----a 5346702  T
Q  433 aaaagttttaaacattcattaccagtgtac 462  Q
    | || |||||||||||||||||||||||||    
T  5346703 agaaattttaaacattcattaccagtgtac 5346732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 5126427 - 5126268
Alignment:
Q  169 attgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgccggttgatgacttaacagataaaagaaggaagaaaattc 268  Q
    |||||| |||||  ||| ||||| ||| |||||||||| || || |||||||||||||| ||  ||||||| ||||   |||| | || |||||||||||    
T  5126427 attgtttgtagtgctgaagaaaaggaaggctttgtcaggaaggtatctcctcaagtggctcccattgatgatttaaagcataacaaaaagaagaaaattc 5126328  T
Q  269 tcaagaggaaatggaagaca-aaaaacaatggttgggtaagtattggtgctgctagttgt 327  Q
    ||||||||| ||||||||||  |||| ||||||||| |||||||||||||||||||||||    
T  5126327 tcaagaggagatggaagacagtaaaagaatggttggataagtattggtgctgctagttgt 5126268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 298
Target Start/End: Complemental strand, 5065322 - 5065195
Alignment:
Q  169 attgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgccggttgatgacttaacagataaaagaaggaagaaaattc 268  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||  || || |||||||||||  | || |||| |||||||| ||    
T  5065322 attgtttgtagtggtgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggttcctgtggatgacttaac--acaacagaa-gaagaaaaatc 5065226  T
Q  269 tcaagaggaaatggaagacaa-aaaacaatg 298  Q
    || | |||||||||||||||| |||||||||    
T  5065225 tccaaaggaaatggaagacaataaaacaatg 5065195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 5177930 - 5178127
Alignment:
Q  15 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 112  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  113 atgatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagt 212  Q
    |||||| ||  ||||  |||||| ||||| | || || | |||||  ||||     |||||  ||||| |||||||| ||||||||||||||||| ||||    
T  5178030 atgatgaaccaattggagaaaaaatggagcaatgccaagaacaag--aaga----aattgtgtgtagtggtgatgaagatgaatgctttgtcagagaagt 5178123  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 23127384 - 23127300
Alignment:
Q  43 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 127  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| ||||    
T  23127384 aacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 5279755 - 5279860
Alignment:
Q  15 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 112  Q
    ||||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  113 atgatg 118  Q
    ||||||    
T  5279855 atgatg 5279860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 5346210 - 5346325
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    ||||||||  |||||||| || |||||||| ||||  || |||||||||||  |||| |||||| |||||||||||||| ||||||||| |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  103 tatcttatatatgatg 118  Q
    ||||| ||||||||||    
T  5346310 tatctcatatatgatg 5346325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 5178132 - 5178210
Alignment:
Q  149 atgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 227  Q
    ||||||||||| | | ||  |||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5178132 atgcacaagattacaatgtcattgttagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5178210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 5126743 - 5126628
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | |||||||||| |||||||| |||   || |||||||| ||  |||||||||||||| |||| |||||| ||||||||| |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  103 tatcttatatatgatg 118  Q
    ||||| ||||||||||    
T  5126643 tatctcatatatgatg 5126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 5689007 - 5688902
Alignment:
Q  15 cagagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatat 112  Q
    ||||||||||| |||||||| ||||   | |||||||||||  |||||  |||||||||||| |||||| |||||||||  ||||||||||||||  |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  113 atgatg 118  Q
    ||||||    
T  5688907 atgatg 5688902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 5688769 - 5688716
Alignment:
Q  174 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 227  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5688769 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 5279988 - 5280040
Alignment:
Q  174 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 226  Q
    ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||    
T  5279988 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtgg 5280040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 5398286 - 5398341
Alignment:
Q  62 ttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 117  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  5398286 ttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 5098432 - 5098530
Alignment:
Q  43 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggag 141  Q
    |||||||||||  |  |||||||||| |||||  ||||| ||||||| | |||| ||||||||||  ||||||||| ||  |||| |||||||||||||    
T  5098432 aacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattggtgaaaaagtggag 5098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5100916 - 5100828
Alignment:
Q  21 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 107  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5100828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 5124514 - 5124433
Alignment:
Q  46 aaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 127  Q
    |||||||| |||||| |||||||| ||||  | ||| ||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  5124514 aaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaactgattg 5124433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 5136017 - 5135929
Alignment:
Q  21 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 107  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5135929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 5242614 - 5242511
Alignment:
Q  17 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 114  Q
    ||||||||| | |||||| ||||  || |||||||||||  | ||| |||||||||||||  ||||| ||||||||| ||||  |||||||||  |||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  115 gatg 118  Q
    ||||    
T  5242514 gatg 5242511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 5253988 - 5254036
Alignment:
Q  211 gtctctcctcaagtggcgccggttgatgacttaacagataaaagaagga 259  Q
    ||||||||| ||||||||||  | ||||||||||||||||| |||||||    
T  5253988 gtctctcctaaagtggcgcccttggatgacttaacagataacagaagga 5254036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 5279915 - 5279955
Alignment:
Q  176 gtagtagtgatgaaaatgaatgctttgtcagaaaagtctct 216  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    
T  5279915 gtagtggtgatgaagatgaatgctttgtcagagaagtctct 5279955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 5427081 - 5427196
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | | |||||||| |||||||| ||||  || |||||| ||||  | ||| |||||||||||||  |||||||||||| || ||||  ||||    
T  5427081 tgaggagggggaaagagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtt 5427180  T
Q  103 tatcttatatatgatg 118  Q
    |||||  |||||||||    
T  5427181 tatctcgtatatgatg 5427196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 47985507 - 47985393
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  103 tatcttatatatgat 117  Q
    |||||| ||||||||    
T  47985407 tatcttgtatatgat 47985393  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 47994794 - 47994680
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  47994794 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47994695  T
Q  103 tatcttatatatgat 117  Q
    |||||| ||||||||    
T  47994694 tatcttgtatatgat 47994680  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 48004081 - 48003967
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  103 tatcttatatatgat 117  Q
    |||||| ||||||||    
T  48003981 tatcttgtatatgat 48003967  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 48013366 - 48013252
Alignment:
Q  5 tgaggaggagcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtt 102  Q
    |||||||| | |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | |||||    
T  48013366 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48013267  T
Q  103 tatcttatatatgat 117  Q
    |||||| ||||||||    
T  48013266 tatcttgtatatgat 48013252  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 4132676 - 4132576
Alignment:
Q  59 ttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaaga 158  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||||||| |||||||||| ||  |||| ||||||  ||| | | ||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T
Q  159 t 159  Q
    |    
T  4132576 t 4132576  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 4122717 - 4122643
Alignment:
Q  44 acaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 118  Q
    ||||||||||  |||||||||||||||  ||  ||||| |||||| || |||| |||||||||| ||||||||||    
T  4122717 acaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 4122643  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 7955 - 7878
Alignment:
Q  39 cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatga 116  Q
    |||||||||||||||  ||||||||||||||| | | |||||| ||| |||    |||||| ||||||||||||||||    
T  7955 cggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

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