View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_high_13 (Length: 223)
Name: NF20110_high_13
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 8556643 - 8556830
Alignment:
| Q |
19 |
gtttgatcatcctcgttatagcactcctttcaaaagaggtgttaatcactacttttacttccataatactggtcttcaacctcaaagcgtcctttatgtt |
118 |
Q |
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| T |
8556643 |
gtttgatcatcctcgttataccactcctttcaaaagaggtgttaatcactacttttacttccacaatactggtcttcaacctcaaagcgtcctttatgtt |
8556742 |
T |
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| Q |
119 |
caggtaacttactttctcatctactatttttgtttcttttgtttcaagttgtgtagtagccataacctctgcaaccttttatcatctg |
206 |
Q |
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| T |
8556743 |
caggtaacttactttctcatctactatttttgtttcttttgtttcaagttgcttagtagccataaactctgcaaccttttatcatctg |
8556830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 8552309 - 8552397
Alignment:
| Q |
19 |
gtttgatcatcctcgttatagcactcctttcaaaagaggtgttaatcactacttttacttccataatactggtcttcaacctcaaagcgtcctttatgtt |
118 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
8552309 |
gtttgatcatcctcgttataccgctcctttcaaaagaggtgctaatcac--------------taatactggtcttcaacctcaaagtgtcctttatgtt |
8552394 |
T |
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