View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_high_6 (Length: 321)
Name: NF20110_high_6
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 41015826 - 41015708
Alignment:
| Q |
146 |
gagaaactttataatgttgcgtttaatttgatttgaatttaacctaaattttgaacactctccctccgggtttcataataacggacacatttgtccattt |
245 |
Q |
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| T |
41015826 |
gagaaactttataatgttgcgtttaatttgatttgaatttaacctaaattttgaacact----ctccgggttccataataaccgacacatttgaccattt |
41015731 |
T |
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| Q |
246 |
tatatacattaagaggttccttt |
268 |
Q |
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| T |
41015730 |
catatacattaagagattccttt |
41015708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41015907 - 41015823
Alignment:
| Q |
1 |
tggaatggctaacctatgattctatgttactgtaatatgtgactttgtaaccaccatcatctctctatcaatgctgtatgtacgaga |
87 |
Q |
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| T |
41015907 |
tggaatggctaacctatgattctatgttattgtaatatg--actttgtaaccaccatcatctctctatcaatgctgtatgtacgaga |
41015823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 41015697 - 41015668
Alignment:
| Q |
283 |
gacatattaagagtgaacaagcattttctt |
312 |
Q |
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| T |
41015697 |
gacatattaagagtgaacaagcattttctt |
41015668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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