View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_1 (Length: 810)
Name: NF20110_low_1
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 726; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 11 - 795
Target Start/End: Complemental strand, 3207441 - 3206657
Alignment:
| Q |
11 |
tgagatgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatgggtt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3207441 |
tgagatgaagcaaaaggtaacatattgggttgattttatacctgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatgggtt |
3207342 |
T |
|
| Q |
111 |
tctgcaaagtattctgttagcattcctattgctgttgtctttgagtatgttggcacagtaaattaattatatcatgactttttattaaggaataaatata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3207341 |
tctgcaaagtattctgttagcattcctattgctgttgtctttgagtatgttggcacggtaaattaattatagcatgactttttattaaggaataaatata |
3207242 |
T |
|
| Q |
211 |
ggaactaaaaagtttgcaaacatgtgtttgaaacttggagcttatttaatttcttagacgttaattttaagtccatttctcttatgaaattatgagtctt |
310 |
Q |
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| T |
3207241 |
ggaactaaaaagtttgcaaacatgtgtttgaaacttggagcttatttaatttcttagacgttaattttaagtccatttctcttatgaaattatgagtctt |
3207142 |
T |
|
| Q |
311 |
aagtaatcttatttcataatcttctttcaaatgatagtaatatgaattttatcaagtaataaagggtgcattagaagaaggnnnnnnnnncattaaactg |
410 |
Q |
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| T |
3207141 |
aagtaatcttatttcataatcttctttcaaatgatagtaatatgaattttatcaaataataaagggtgcattagaagaagaaaaaaaatacattaaactg |
3207042 |
T |
|
| Q |
411 |
ggttaccaattttcttgtttcaatattcctctatacatagcatgtttccgaagtataatatatattcttgcttcaagttaaaagctatttaacaatggaa |
510 |
Q |
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| T |
3207041 |
ggttaccaattttcttgtttcaatattcctctatacatagcatgtttccgaagtataatatatattcttgcttcaagttaaaagctatttaacaatggag |
3206942 |
T |
|
| Q |
511 |
ttttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacattttataatagacaacaatgtaaaatggtgatttc |
610 |
Q |
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| T |
3206941 |
ttttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacattttataatagacaacaatgtaaaatggtgatttc |
3206842 |
T |
|
| Q |
611 |
cccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaaatgacatccaagtccaaccatgatggtagag |
710 |
Q |
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| T |
3206841 |
cccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaaatgacatccaagtccaaccatgatggtagag |
3206742 |
T |
|
| Q |
711 |
acatcattttgaacatcattgagtgtttgatcaagattagacggctggaaaatctaaattttgtttgaccgtctaatcttgattg |
795 |
Q |
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| T |
3206741 |
acatcattttgaacatcattgagtgtttgatcaagattagacggctggaaaatctaaattttgttttaccgtctaatctcgattg |
3206657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 3201462 - 3201242
Alignment:
| Q |
16 |
tgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatgggtttctgc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
3201462 |
tgaagcaaaaggtaacatattgggttgattttatacctgaagacaaagagaatagaggtgataactttattgctcaaggatctatcaagtggatttctgc |
3201363 |
T |
|
| Q |
116 |
aaagtattctgttagcattcctattgctgttgtctttgagt----atgttggcacagtaaattaattatatcatgac-ttttta--ttaaggaataaata |
208 |
Q |
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| T |
3201362 |
aaagtattctgttagcattcctattgctgtcgtatttgtgtgaaaatg-tggcaaaataaattaattagagcatgacattattatgttaaggaataaata |
3201264 |
T |
|
| Q |
209 |
taggaactaaaaagtttgcaaa |
230 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
3201263 |
taggaaataaaaagtttgcaaa |
3201242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 575 - 622
Target Start/End: Complemental strand, 3200897 - 3200850
Alignment:
| Q |
575 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
622 |
Q |
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| T |
3200897 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
3200850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 3215377 - 3215249
Alignment:
| Q |
11 |
tgagatgaagcaaaaggtaacatattgggttgattttatacccgaagataaagagaatagaggtgataactttattgctcaaggctctatcaaatgggtt |
110 |
Q |
| |
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||||| ||||||||| || ||||| | ||||| ||||| ||||||| | | || ||||||||||||||| ||| |||| || |||||||| |||||| |
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| T |
3215377 |
tgagaagaagcaaaaagttacatactcggttgcttttacacccgaaaacatagtgaatagaggtgataaggaaatttctcagggatctatcaagtgggtt |
3215278 |
T |
|
| Q |
111 |
tctgcaaagtattctgttagcattcctat |
139 |
Q |
| |
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|||| ||||||| | ||||| || ||||| |
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| T |
3215277 |
tctggaaagtataccgttagaatccctat |
3215249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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