View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20110_low_10 (Length: 296)

Name: NF20110_low_10
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20110_low_10
NF20110_low_10
[»] scaffold0115 (2 HSPs)
scaffold0115 (18-161)||(35159-35302)
scaffold0115 (156-278)||(34970-35095)
[»] scaffold0048 (1 HSPs)
scaffold0048 (234-274)||(48682-48722)
[»] chr7 (2 HSPs)
chr7 (234-274)||(26565532-26565572)
chr7 (234-272)||(30294358-30294396)
[»] chr4 (8 HSPs)
chr4 (234-274)||(7803200-7803240)
chr4 (234-274)||(7825154-7825194)
chr4 (234-274)||(7815751-7815791)
chr4 (237-271)||(8011124-8011158)
chr4 (237-270)||(18459605-18459638)
chr4 (234-274)||(7044867-7044907)
chr4 (234-274)||(9149708-9149748)
chr4 (235-271)||(22060719-22060755)
[»] chr1 (4 HSPs)
chr1 (154-220)||(18891641-18891707)
chr1 (234-274)||(17055902-17055942)
chr1 (234-274)||(27917355-27917394)
chr1 (235-271)||(39845218-39845254)
[»] chr5 (2 HSPs)
chr5 (234-274)||(24648121-24648161)
chr5 (235-274)||(13349519-13349558)
[»] chr2 (5 HSPs)
chr2 (234-274)||(25539130-25539170)
chr2 (234-274)||(27406895-27406935)
chr2 (234-265)||(8428329-8428360)
chr2 (236-274)||(13502949-13502987)
chr2 (234-270)||(19492036-19492072)
[»] chr8 (3 HSPs)
chr8 (239-269)||(8582153-8582183)
chr8 (237-271)||(26575113-26575147)
chr8 (170-210)||(24056542-24056582)
[»] chr6 (4 HSPs)
chr6 (234-271)||(31407398-31407435)
chr6 (234-274)||(3573875-3573915)
chr6 (234-270)||(4841816-4841852)
chr6 (234-274)||(18490624-18490664)
[»] chr3 (1 HSPs)
chr3 (234-271)||(10872852-10872889)


Alignment Details
Target: scaffold0115 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 35302 - 35159
Alignment:
Q  18 atccacttatatgaagacaccaatggtgtgtagatatatacaagaggtatagttgcaagctagttagaacaccaatggtgtgtagattgaagttatcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35302 atccacttatatgaagacaccaatggtgtgtagatatatacaagaggtatagttgcaagctagttagaacaccaatggtgtgttgattgaagttatcaaa 35203  T
Q  118 gtgtgacgaagcatattgttgtcaaaatctcgacttaaattcta 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35202 gtgtgacgaagcatattgttgtcaaaatctcgacttaaattcta 35159  T

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Target: scaffold0115; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 35095 - 34970
Alignment:
Q  156 attctaggaaaaccgcatcaatatcgtgaaattcatacaacattacaggattttaaaggattttgtcc---nnnnnnnnnatagtcatttatgtataaat 252  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |            ||||||||||||||||||||    
T  35095 attctaggaaaaccgcatcaacatcgtgaaattcatacaacattgcaggattttaaaggattttgttcttttttttttttatagtcatttatgtataaat 34996  T
Q  253 attttgtggactttaaactgagccat 278  Q
    ||||||||||||||||||||||||||    
T  34995 attttgtggactttaaactgagccat 34970  T

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Target: scaffold0048 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 48722 - 48682
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  48722 tagtcatttatgtataattattttgtggactttaaactgag 48682  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 26565572 - 26565532
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  26565572 tagtcatttatgtataagtattttgtggactttaaactgag 26565532  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 30294358 - 30294396
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactg 272  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  30294358 tagtcatttatgtataactattttgtggactttatactg 30294396  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7803200 - 7803240
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  7803200 tagtcatttatgtataagtattttgtggactttaaactgag 7803240  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7825154 - 7825194
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  7825154 tagtcatttatgtataagtattttgtggactttaaactgag 7825194  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7815751 - 7815791
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  7815751 tagtcatttatgtataagtattatgtggactttaaactgag 7815791  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 8011158 - 8011124
Alignment:
Q  237 tcatttatgtataaatattttgtggactttaaact 271  Q
    |||||||||||||| ||||||||||||||||||||    
T  8011158 tcatttatgtataagtattttgtggactttaaact 8011124  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 18459638 - 18459605
Alignment:
Q  237 tcatttatgtataaatattttgtggactttaaac 270  Q
    |||||||||||||| |||||||||||||||||||    
T  18459638 tcatttatgtataagtattttgtggactttaaac 18459605  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7044867 - 7044907
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| ||| |||| ||||||||||||||    
T  7044867 tagtcatttatgtataagtatcttgtcgactttaaactgag 7044907  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 9149748 - 9149708
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||| |||||||||| |||||    
T  9149748 tagtcatttatgtataagtattttttggactttaagctgag 9149708  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 22060755 - 22060719
Alignment:
Q  235 agtcatttatgtataaatattttgtggactttaaact 271  Q
    |||||||||||||||| |||||||||||||| |||||    
T  22060755 agtcatttatgtataagtattttgtggacttgaaact 22060719  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 18891707 - 18891641
Alignment:
Q  154 aaattctaggaaaaccgcatcaatatcgtgaaattcatacaacattacaggattttaaaggattttg 220  Q
    ||||||||| |||| |||||||| |||||||||||||||| | ||| || ||||||||||| |||||    
T  18891707 aaattctagtaaaatcgcatcaaaatcgtgaaattcatacgaaattgcacgattttaaagggttttg 18891641  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 17055942 - 17055902
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  17055942 tagtcatttatgtataagtattttgtggactttaaattgag 17055902  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 27917394 - 27917355
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  27917394 tagtcatttatgtataagtattttgt-gactttaaactgag 27917355  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 39845254 - 39845218
Alignment:
Q  235 agtcatttatgtataaatattttgtggactttaaact 271  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  39845254 agtcatttatttataagtattttgtggactttaaact 39845218  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 24648121 - 24648161
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  24648121 tagtcatttatgtataagtattttgtggactttaaattgag 24648161  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 13349558 - 13349519
Alignment:
Q  235 agtcatttatgtataaatattttgtggactttaaactgag 274  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  13349558 agtcatttatgtataagtattttgtggacttcaaactgag 13349519  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 25539170 - 25539130
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  25539170 tagtcatttatttataagtattttgtggactttaaactgag 25539130  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 27406895 - 27406935
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  27406895 tagtcatttatgtatatgtattttgtggactttaaactgag 27406935  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 8428329 - 8428360
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactt 265  Q
    ||||||||||||||||||||||||||||||||    
T  8428329 tagtcatttatgtataaatattttgtggactt 8428360  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 13502987 - 13502949
Alignment:
Q  236 gtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  13502987 gtcatttatgtataagtattttgtggagtttaaactgag 13502949  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 19492036 - 19492072
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaac 270  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  19492036 tagtcatttatgtataagtattctgtggactttaaac 19492072  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 269
Target Start/End: Original strand, 8582153 - 8582183
Alignment:
Q  239 atttatgtataaatattttgtggactttaaa 269  Q
    |||||||||||||||||||||||||||||||    
T  8582153 atttatgtataaatattttgtggactttaaa 8582183  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 26575147 - 26575113
Alignment:
Q  237 tcatttatgtataaatattttgtggactttaaact 271  Q
    |||||||||||||| ||||||||||||||||||||    
T  26575147 tcatttatgtataagtattttgtggactttaaact 26575113  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 24056582 - 24056542
Alignment:
Q  170 gcatcaatatcgtgaaattcatacaacattacaggatttta 210  Q
    ||||||| |||||||||||||||||| ||| ||||||||||    
T  24056582 gcatcaaaatcgtgaaattcatacaaaattgcaggatttta 24056542  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 31407398 - 31407435
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaact 271  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  31407398 tagtcatttatgtataagtattttgtggaatttaaact 31407435  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 3573915 - 3573875
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||| ||| ||||||||||||||||| |||||    
T  3573915 tagtcatttatgtttaagtattttgtggactttaatctgag 3573875  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 4841852 - 4841816
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaac 270  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  4841852 tagtcatttatgtataaacattttatggactttaaac 4841816  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 18490664 - 18490624
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaactgag 274  Q
    ||||||||||||||||  |||||||||||||||| ||||||    
T  18490664 tagtcatttatgtatatgtattttgtggactttatactgag 18490624  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 10872889 - 10872852
Alignment:
Q  234 tagtcatttatgtataaatattttgtggactttaaact 271  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  10872889 tagtcatttatgtttaagtattttgtggactttaaact 10872852  T

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