View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_12 (Length: 245)
Name: NF20110_low_12
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 5576389 - 5576236
Alignment:
| Q |
16 |
cttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtggaagctccatgagagaagacgatacagtgcaagaccattgttt |
115 |
Q |
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| T |
5576389 |
cttgccacatccagctcacaaagttctcctctcctatttcattggcgagctgaagtggaagctccatgagagaagacgatacagtgcaagactattgttt |
5576290 |
T |
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| Q |
116 |
ggggctgtttgtatagtagcaggtttctatgatttgatttctgcataattgtct |
169 |
Q |
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| T |
5576289 |
ggggctgtttgtatagtaacaggtttttatgatttgacttctgcataattgtct |
5576236 |
T |
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