View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20110_low_16 (Length: 209)
Name: NF20110_low_16
Description: NF20110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20110_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 27776755 - 27776796
Alignment:
| Q |
122 |
ccctagttaattagtggtaaatggattgatgagatggcatta |
163 |
Q |
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| T |
27776755 |
ccctagttaattagtggtaaatggattgatgagatggcatta |
27776796 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 27776724 - 27776760
Alignment:
| Q |
163 |
aactaaaaagaaaaacctagtatcaattaaaccctag |
199 |
Q |
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| T |
27776724 |
aactaaaaagaaaaacctagtatcaattaaaccctag |
27776760 |
T |
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